Lipfert J - Search Results

1

Blind predictions of DNA and RNA tweezers experiments with force and torque.

Chou FC, Lipfert J, Das R. Chou FC, et al. Among authors: lipfert j. PLoS Comput Biol. 2014 Aug 7;10(8):e1003756. doi: 10.1371/journal.pcbi.1003756. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25102226 Free PMC article.

2

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.

Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. Lipfert J, et al. J Mol Biol. 2007 Feb 2;365(5):1393-406. doi: 10.1016/j.jmb.2006.10.022. Epub 2006 Oct 13. J Mol Biol. 2007. PMID: 17118400 Free PMC article.

3

Single-molecule magnetic tweezers studies of type IB topoisomerases.

Lipfert J, Koster DA, Vilfan ID, Hage S, Dekker NH. Lipfert J, et al. Methods Mol Biol. 2009;582:71-89. doi: 10.1007/978-1-60761-340-4_7. Methods Mol Biol. 2009. PMID: 19763943

4

Do conformational biases of simple helical junctions influence RNA folding stability and specificity?

Chu VB, Lipfert J, Bai Y, Pande VS, Doniach S, Herschlag D. Chu VB, et al. Among authors: lipfert j. RNA. 2009 Dec;15(12):2195-205. doi: 10.1261/rna.1747509. Epub 2009 Oct 22. RNA. 2009. PMID: 19850914 Free PMC article.

5

Torsional sensing of small-molecule binding using magnetic tweezers.

Lipfert J, Klijnhout S, Dekker NH. Lipfert J, et al. Nucleic Acids Res. 2010 Nov;38(20):7122-32. doi: 10.1093/nar/gkq598. Epub 2010 Jul 12. Nucleic Acids Res. 2010. PMID: 20624816 Free PMC article.

6

Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

te Velthuis AJ, Kerssemakers JW, Lipfert J, Dekker NH. te Velthuis AJ, et al. Among authors: lipfert j. Biophys J. 2010 Aug 9;99(4):1292-302. doi: 10.1016/j.bpj.2010.06.008. Biophys J. 2010. PMID: 20713015 Free PMC article.

7

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Lipfert J, Kerssemakers JW, Jager T, Dekker NH. Lipfert J, et al. Nat Methods. 2010 Dec;7(12):977-80. doi: 10.1038/nmeth.1520. Epub 2010 Oct 17. Nat Methods. 2010. PMID: 20953173

8

Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids.

Lipfert J, Wiggin M, Kerssemakers JW, Pedaci F, Dekker NH. Lipfert J, et al. Nat Commun. 2011 Aug 23;2:439. doi: 10.1038/ncomms1450. Nat Commun. 2011. PMID: 21863006 Free PMC article.

9

Understanding nucleic acid-ion interactions.

Lipfert J, Doniach S, Das R, Herschlag D. Lipfert J, et al. Annu Rev Biochem. 2014;83:813-41. doi: 10.1146/annurev-biochem-060409-092720. Epub 2014 Mar 5. Annu Rev Biochem. 2014. PMID: 24606136 Free PMC article. Review.

10

Magnetic tweezers for the measurement of twist and torque.

Lipfert J, Lee M, Ordu O, Kerssemakers JW, Dekker NH. Lipfert J, et al. J Vis Exp. 2014 May 19;(87):51503. doi: 10.3791/51503. J Vis Exp. 2014. PMID: 24894412 Free PMC article.

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