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Functional importance of cardiac enhancer-associated noncoding RNAs in heart development and disease.
Ounzain S, Pezzuto I, Micheletti R, Burdet F, Sheta R, Nemir M, Gonzales C, Sarre A, Alexanian M, Blow MJ, May D, Johnson R, Dauvillier J, Pennacchio LA, Pedrazzini T. Ounzain S, et al. Among authors: johnson r. J Mol Cell Cardiol. 2014 Nov;76:55-70. doi: 10.1016/j.yjmcc.2014.08.009. Epub 2014 Aug 19. J Mol Cell Cardiol. 2014. PMID: 25149110 Free PMC article.
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. Derrien T, et al. Among authors: johnson r. Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111. Genome Res. 2012. PMID: 22955988 Free PMC article.
Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs.
Ounzain S, Micheletti R, Beckmann T, Schroen B, Alexanian M, Pezzuto I, Crippa S, Nemir M, Sarre A, Johnson R, Dauvillier J, Burdet F, Ibberson M, Guigó R, Xenarios I, Heymans S, Pedrazzini T. Ounzain S, et al. Among authors: johnson r. Eur Heart J. 2015 Feb 7;36(6):353-68a. doi: 10.1093/eurheartj/ehu180. Epub 2014 Apr 30. Eur Heart J. 2015. PMID: 24786300 Free PMC article.
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis.
Ounzain S, Micheletti R, Arnan C, Plaisance I, Cecchi D, Schroen B, Reverter F, Alexanian M, Gonzales C, Ng SY, Bussotti G, Pezzuto I, Notredame C, Heymans S, Guigó R, Johnson R, Pedrazzini T. Ounzain S, et al. Among authors: johnson r. J Mol Cell Cardiol. 2015 Dec;89(Pt A):98-112. doi: 10.1016/j.yjmcc.2015.09.016. Epub 2015 Sep 28. J Mol Cell Cardiol. 2015. PMID: 26423156 Free article.
LncATLAS database for subcellular localization of long noncoding RNAs.
Mas-Ponte D, Carlevaro-Fita J, Palumbo E, Hermoso Pulido T, Guigo R, Johnson R. Mas-Ponte D, et al. Among authors: johnson r. RNA. 2017 Jul;23(7):1080-1087. doi: 10.1261/rna.060814.117. Epub 2017 Apr 6. RNA. 2017. PMID: 28386015 Free PMC article.
Expanded encyclopaedias of DNA elements in the human and mouse genomes.
ENCODE Project Consortium; Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):699-710. doi: 10.1038/s41586-020-2493-4. Epub 2020 Jul 29. Nature. 2020. PMID: 32728249 Free PMC article.
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