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39 results

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Correcting Illumina data.
Molnar M, Ilie L. Molnar M, et al. Among authors: ilie l. Brief Bioinform. 2015 Jul;16(4):588-99. doi: 10.1093/bib/bbu029. Epub 2014 Sep 1. Brief Bioinform. 2015. PMID: 25183248
SAGE: String-overlap Assembly of GEnomes.
Ilie L, Haider B, Molnar M, Solis-Oba R. Ilie L, et al. BMC Bioinformatics. 2014 Sep 15;15(1):302. doi: 10.1186/1471-2105-15-302. BMC Bioinformatics. 2014. PMID: 25225118 Free PMC article.
SAGE2: parallel human genome assembly.
Molnar M, Haghshenas E, Ilie L. Molnar M, et al. Among authors: ilie l. Bioinformatics. 2018 Feb 15;34(4):678-680. doi: 10.1093/bioinformatics/btx648. Bioinformatics. 2018. PMID: 29045591
HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N, Ilie L. Khiste N, et al. Among authors: ilie l. BMC Bioinformatics. 2017 Dec 19;18(1):564. doi: 10.1186/s12859-017-1953-9. BMC Bioinformatics. 2017. PMID: 29258419 Free PMC article.
LASER: Large genome ASsembly EvaluatoR.
Khiste N, Ilie L. Khiste N, et al. Among authors: ilie l. BMC Res Notes. 2015 Nov 24;8:709. doi: 10.1186/s13104-015-1682-y. BMC Res Notes. 2015. PMID: 26601933 Free PMC article.
Multiple spaced seeds for homology search.
Ilie L, Ilie S. Ilie L, et al. Among authors: ilie s. Bioinformatics. 2007 Nov 15;23(22):2969-77. doi: 10.1093/bioinformatics/btm422. Epub 2007 Sep 5. Bioinformatics. 2007. PMID: 17804438
Fast computation of neighbor seeds.
Ilie L, Ilie S. Ilie L, et al. Among authors: ilie s. Bioinformatics. 2009 Mar 15;25(6):822-3. doi: 10.1093/bioinformatics/btp054. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176560
SpEED: fast computation of sensitive spaced seeds.
Ilie L, Ilie S, Bigvand AM. Ilie L, et al. Among authors: ilie s. Bioinformatics. 2011 Sep 1;27(17):2433-4. doi: 10.1093/bioinformatics/btr368. Epub 2011 Jun 20. Bioinformatics. 2011. PMID: 21690104
39 results