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CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators.
Kowalski MH, Wessels HH, Linder J, Choudhary S, Hartman A, Hao Y, Mascio I, Dalgarno C, Kundaje A, Satija R. Kowalski MH, et al. Among authors: satija r. bioRxiv [Preprint]. 2023 Feb 10:2023.02.09.527751. doi: 10.1101/2023.02.09.527751. bioRxiv. 2023. Update in: Cell. 2024 Aug 8;187(16):4408-4425.e23. doi: 10.1016/j.cell.2024.06.005 PMID: 36798324 Free PMC article. Updated. Preprint.
Multimodal characterization of antigen-specific CD8 + T cells across SARS-CoV-2 vaccination and infection.
Zhang B, Upadhyay R, Hao Y, Samanovic MI, Herati RS, Blair J, Axelrad J, Mulligan MJ, Littman DR, Satija R. Zhang B, et al. Among authors: satija r. bioRxiv [Preprint]. 2023 Jan 24:2023.01.24.525203. doi: 10.1101/2023.01.24.525203. bioRxiv. 2023. Update in: Nat Immunol. 2023 Oct;24(10):1725-1734. doi: 10.1038/s41590-023-01608-9 PMID: 36747786 Free PMC article. Updated. Preprint.
Dictionary learning for integrative, multimodal and scalable single-cell analysis.
Hao Y, Stuart T, Kowalski MH, Choudhary S, Hoffman P, Hartman A, Srivastava A, Molla G, Madad S, Fernandez-Granda C, Satija R. Hao Y, et al. Among authors: satija r. Nat Biotechnol. 2024 Feb;42(2):293-304. doi: 10.1038/s41587-023-01767-y. Epub 2023 May 25. Nat Biotechnol. 2024. PMID: 37231261 Free PMC article.
Sensitive cluster-free differential expression testing.
Missarova A, Dann E, Rosen L, Satija R, Marioni J. Missarova A, et al. Among authors: satija r. bioRxiv [Preprint]. 2023 Mar 10:2023.03.08.531744. doi: 10.1101/2023.03.08.531744. bioRxiv. 2023. PMID: 36945506 Free PMC article. Preprint.
Dynamic regulatory network controlling TH17 cell differentiation.
Yosef N, Shalek AK, Gaublomme JT, Jin H, Lee Y, Awasthi A, Wu C, Karwacz K, Xiao S, Jorgolli M, Gennert D, Satija R, Shakya A, Lu DY, Trombetta JJ, Pillai MR, Ratcliffe PJ, Coleman ML, Bix M, Tantin D, Park H, Kuchroo VK, Regev A. Yosef N, et al. Among authors: satija r. Nature. 2013 Apr 25;496(7446):461-8. doi: 10.1038/nature11981. Epub 2013 Mar 6. Nature. 2013. PMID: 23467089 Free PMC article.
109 results