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Pragmatic Coarse-Graining of Proteins: Models and Applications.
Borges-Araújo L, Patmanidis I, Singh AP, Santos LHS, Sieradzan AK, Vanni S, Czaplewski C, Pantano S, Shinoda W, Monticelli L, Liwo A, Marrink SJ, Souza PCT. Borges-Araújo L, et al. Among authors: shinoda w. J Chem Theory Comput. 2023 Oct 24;19(20):7112-7135. doi: 10.1021/acs.jctc.3c00733. Epub 2023 Oct 3. J Chem Theory Comput. 2023. PMID: 37788237 Review.
Complex Energy Landscapes of Self-Assembled Vesicles.
Luan J, Wang D, Zhang S, Miyazaki Y, Shinoda W, Wilson DA. Luan J, et al. Among authors: shinoda w. J Am Chem Soc. 2023 Jul 19;145(28):15496-15506. doi: 10.1021/jacs.3c04285. Epub 2023 Jul 10. J Am Chem Soc. 2023. PMID: 37427769 Free PMC article.
pSPICA Force Field Extended for Proteins and Peptides.
Miyazaki Y, Shinoda W. Miyazaki Y, et al. Among authors: shinoda w. J Chem Inf Model. 2024 Jan 22;64(2):532-542. doi: 10.1021/acs.jcim.3c01611. Epub 2023 Dec 29. J Chem Inf Model. 2024. PMID: 38156656
Molecular Level Origin of Ion Dynamics in Highly Concentrated Electrolytes.
Shigenobu K, Tsuzuki S, Philippi F, Sudoh T, Ugata Y, Dokko K, Watanabe M, Ueno K, Shinoda W. Shigenobu K, et al. Among authors: shinoda w. J Phys Chem B. 2023 Dec 7;127(48):10422-10433. doi: 10.1021/acs.jpcb.3c05864. Epub 2023 Nov 28. J Phys Chem B. 2023. PMID: 38015036
98 results