Loman NJ - Search Results

1

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.

Quick J, Quinlan AR, Loman NJ. Quick J, et al. Among authors: loman nj. Gigascience. 2014 Oct 20;3:22. doi: 10.1186/2047-217X-3-22. eCollection 2014. Gigascience. 2014. PMID: 25386338 Free PMC article.

2

A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.

Loman NJ, Constantinidou C, Christner M, Rohde H, Chan JZ, Quick J, Weir JC, Quince C, Smith GP, Betley JR, Aepfelbacher M, Pallen MJ. Loman NJ, et al. JAMA. 2013 Apr 10;309(14):1502-10. doi: 10.1001/jama.2013.3231. JAMA. 2013. PMID: 23571589

3

Draft Genome Sequence of Elizabethkingia meningoseptica Isolated from a Traumatic Wound.

Quick J, Constantinidou C, Pallen MJ, Oppenheim B, Loman NJ. Quick J, et al. Among authors: loman nj. Genome Announc. 2014 May 8;2(3):e00355-14. doi: 10.1128/genomeA.00355-14. Genome Announc. 2014. PMID: 24812216 Free PMC article.

4

Poretools: a toolkit for analyzing nanopore sequence data.

Loman NJ, Quinlan AR. Loman NJ, et al. Bioinformatics. 2014 Dec 1;30(23):3399-401. doi: 10.1093/bioinformatics/btu555. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143291 Free PMC article.

5

Binning metagenomic contigs by coverage and composition.

Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C. Alneberg J, et al. Among authors: loman nj. Nat Methods. 2014 Nov;11(11):1144-6. doi: 10.1038/nmeth.3103. Epub 2014 Sep 14. Nat Methods. 2014. PMID: 25218180

6

Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing.

Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, Loman NJ. Quick J, et al. Among authors: loman nj. BMJ Open. 2014 Nov 4;4(11):e006278. doi: 10.1136/bmjopen-2014-006278. BMJ Open. 2014. PMID: 25371418 Free PMC article.

7

Erratum: A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer.

Quick J, Quinlan AR, Loman NJ. Quick J, et al. Among authors: loman nj. Gigascience. 2015 Feb 13;4:6. doi: 10.1186/s13742-015-0043-z. eCollection 2015. Gigascience. 2015. PMID: 25695306 Free PMC article.

8

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.

Kay GL, Sergeant MJ, Zhou Z, Chan JZ, Millard A, Quick J, Szikossy I, Pap I, Spigelman M, Loman NJ, Achtman M, Donoghue HD, Pallen MJ. Kay GL, et al. Among authors: loman nj. Nat Commun. 2015 Apr 7;6:6717. doi: 10.1038/ncomms7717. Nat Commun. 2015. PMID: 25848958 Free PMC article.

9

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella.

Quick J, Ashton P, Calus S, Chatt C, Gossain S, Hawker J, Nair S, Neal K, Nye K, Peters T, De Pinna E, Robinson E, Struthers K, Webber M, Catto A, Dallman TJ, Hawkey P, Loman NJ. Quick J, et al. Among authors: loman nj. Genome Biol. 2015 May 30;16:114. doi: 10.1186/s13059-015-0677-2. Genome Biol. 2015. PMID: 26025440 Free PMC article.

10

A complete bacterial genome assembled de novo using only nanopore sequencing data.

Loman NJ, Quick J, Simpson JT. Loman NJ, et al. Nat Methods. 2015 Aug;12(8):733-5. doi: 10.1038/nmeth.3444. Epub 2015 Jun 15. Nat Methods. 2015. PMID: 26076426

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