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PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. Adams PD, et al. Among authors: bunkoczi g. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20124702 Free PMC article.
The Phenix software for automated determination of macromolecular structures.
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Echols N, Headd JJ, Hung LW, Jain S, Kapral GJ, Grosse Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner RD, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. Adams PD, et al. Among authors: bunkoczi g. Methods. 2011 Sep;55(1):94-106. doi: 10.1016/j.ymeth.2011.07.005. Epub 2011 Jul 29. Methods. 2011. PMID: 21821126 Free PMC article.
Can I solve my structure by SAD phasing? Anomalous signal in SAD phasing.
Terwilliger TC, Bunkóczi G, Hung LW, Zwart PH, Smith JL, Akey DL, Adams PD. Terwilliger TC, et al. Among authors: bunkoczi g. Acta Crystallogr D Struct Biol. 2016 Mar;72(Pt 3):346-58. doi: 10.1107/S2059798315019269. Epub 2016 Mar 1. Acta Crystallogr D Struct Biol. 2016. PMID: 26960122 Free PMC article.
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD. Liebschner D, et al. Among authors: bunkoczi g. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2. Acta Crystallogr D Struct Biol. 2019. PMID: 31588918 Free PMC article.
Improvement of molecular-replacement models with Sculptor.
Bunkóczi G, Read RJ. Bunkóczi G, et al. Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):303-12. doi: 10.1107/S0907444910051218. Epub 2011 Mar 18. Acta Crystallogr D Biol Crystallogr. 2011. PMID: 21460448 Free PMC article.
phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta.
Terwilliger TC, Dimaio F, Read RJ, Baker D, Bunkóczi G, Adams PD, Grosse-Kunstleve RW, Afonine PV, Echols N. Terwilliger TC, et al. Among authors: bunkoczi g. J Struct Funct Genomics. 2012 Jun;13(2):81-90. doi: 10.1007/s10969-012-9129-3. Epub 2012 Mar 15. J Struct Funct Genomics. 2012. PMID: 22418934 Free PMC article.
Improved estimates of coordinate error for molecular replacement.
Oeffner RD, Bunkóczi G, McCoy AJ, Read RJ. Oeffner RD, et al. Among authors: bunkoczi g. Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2209-15. doi: 10.1107/S0907444913023512. Epub 2013 Oct 12. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 24189232 Free PMC article. Clinical Trial.
Phaser.MRage: automated molecular replacement.
Bunkóczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ. Bunkóczi G, et al. Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2276-86. doi: 10.1107/S0907444913022750. Epub 2013 Oct 18. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 24189240 Free PMC article. Review.
30 results