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ALLMAPS: robust scaffold ordering based on multiple maps.
Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable JC, Schnable PS, Lyons E, Lu J. Tang H, et al. Among authors: zhang j, zhang x. Genome Biol. 2015 Jan 13;16(1):3. doi: 10.1186/s13059-014-0573-1. Genome Biol. 2015. PMID: 25583564 Free PMC article.
Evolution and expression of the fructokinase gene family in Saccharum.
Chen Y, Zhang Q, Hu W, Zhang X, Wang L, Hua X, Yu Q, Ming R, Zhang J. Chen Y, et al. Among authors: zhang q, zhang j, zhang x. BMC Genomics. 2017 Feb 21;18(1):197. doi: 10.1186/s12864-017-3535-7. BMC Genomics. 2017. PMID: 28222695 Free PMC article.
PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae.
Bao J, Chen M, Zhong Z, Tang W, Lin L, Zhang X, Jiang H, Zhang D, Miao C, Tang H, Zhang J, Lu G, Ming R, Norvienyeku J, Wang B, Wang Z. Bao J, et al. Among authors: zhang d, zhang j, zhang x. Mol Plant. 2017 Nov 6;10(11):1465-1468. doi: 10.1016/j.molp.2017.08.008. Epub 2017 Aug 31. Mol Plant. 2017. PMID: 28838703 Free article. No abstract available.
Cataloging Plant Genome Structural Variations.
Zhang X, Chen X, Liang P, Tang H. Zhang X, et al. Curr Issues Mol Biol. 2018;27:181-194. doi: 10.21775/cimb.027.181. Epub 2017 Sep 8. Curr Issues Mol Biol. 2018. PMID: 28885182 Free article. Review.
Recent polyploidization events in three Saccharum founding species.
Zhang J, Zhang Q, Li L, Tang H, Zhang Q, Chen Y, Arrow J, Zhang X, Wang A, Miao C, Ming R. Zhang J, et al. Among authors: zhang q, zhang x. Plant Biotechnol J. 2019 Jan;17(1):264-274. doi: 10.1111/pbi.12962. Epub 2018 Jul 24. Plant Biotechnol J. 2019. PMID: 29878497 Free PMC article.
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R. Zhang J, et al. Among authors: zhang q, zhang w, zhang z, zhang x. Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Nat Genet. 2018. PMID: 30297971
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