Webb GI - Search Results

1

Structural and dynamic properties that govern the stability of an engineered fibronectin type III domain.

Porebski BT, Nickson AA, Hoke DE, Hunter MR, Zhu L, McGowan S, Webb GI, Buckle AM. Porebski BT, et al. Among authors: webb gi. Protein Eng Des Sel. 2015 Mar;28(3):67-78. doi: 10.1093/protein/gzv002. Protein Eng Des Sel. 2015. PMID: 25691761 Free PMC article.

2

Prodepth: predict residue depth by support vector regression approach from protein sequences only.

Song J, Tan H, Mahmood K, Law RH, Buckle AM, Webb GI, Akutsu T, Whisstock JC. Song J, et al. Among authors: webb gi. PLoS One. 2009 Sep 17;4(9):e7072. doi: 10.1371/journal.pone.0007072. PLoS One. 2009. PMID: 19759917 Free PMC article.

3

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.

Mahmood K, Konagurthu AS, Song J, Buckle AM, Webb GI, Whisstock JC. Mahmood K, et al. Among authors: webb gi. Bioinformatics. 2010 Sep 1;26(17):2076-84. doi: 10.1093/bioinformatics/btq339. Epub 2010 Jun 27. Bioinformatics. 2010. PMID: 20581400

4

Smoothing a rugged protein folding landscape by sequence-based redesign.

Porebski BT, Keleher S, Hollins JJ, Nickson AA, Marijanovic EM, Borg NA, Costa MG, Pearce MA, Dai W, Zhu L, Irving JA, Hoke DE, Kass I, Whisstock JC, Bottomley SP, Webb GI, McGowan S, Buckle AM. Porebski BT, et al. Among authors: webb gi. Sci Rep. 2016 Sep 26;6:33958. doi: 10.1038/srep33958. Sci Rep. 2016. PMID: 27667094 Free PMC article.

5

Structural Capacitance in Protein Evolution and Human Diseases.

Li C, Clark LVT, Zhang R, Porebski BT, McCoey JM, Borg NA, Webb GI, Kass I, Buckle M, Song J, Woolfson A, Buckle AM. Li C, et al. Among authors: webb gi. J Mol Biol. 2018 Sep 14;430(18 Pt B):3200-3217. doi: 10.1016/j.jmb.2018.06.051. Epub 2018 Jul 3. J Mol Biol. 2018. PMID: 30111491

6

Crysalis: an integrated server for computational analysis and design of protein crystallization.

Wang H, Feng L, Zhang Z, Webb GI, Lin D, Song J. Wang H, et al. Among authors: webb gi. Sci Rep. 2016 Feb 24;6:21383. doi: 10.1038/srep21383. Sci Rep. 2016. PMID: 26906024 Free PMC article.

7

Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity.

Wang H, Feng L, Webb GI, Kurgan L, Song J, Lin D. Wang H, et al. Among authors: webb gi. Brief Bioinform. 2018 Sep 28;19(5):838-852. doi: 10.1093/bib/bbx018. Brief Bioinform. 2018. PMID: 28334201 Free PMC article. Review.

8

Discovery of amino acid motifs for thrombin cleavage and validation using a model substrate.

Ng NM, Pierce JD, Webb GI, Ratnikov BI, Wijeyewickrema LC, Duncan RC, Robertson AL, Bottomley SP, Boyd SE, Pike RN. Ng NM, et al. Among authors: webb gi. Biochemistry. 2011 Dec 6;50(48):10499-507. doi: 10.1021/bi201333g. Epub 2011 Nov 11. Biochemistry. 2011. PMID: 22050556

9

TANGLE: two-level support vector regression approach for protein backbone torsion angle prediction from primary sequences.

Song J, Tan H, Wang M, Webb GI, Akutsu T. Song J, et al. Among authors: webb gi. PLoS One. 2012;7(2):e30361. doi: 10.1371/journal.pone.0030361. Epub 2012 Feb 2. PLoS One. 2012. PMID: 22319565 Free PMC article.

10

PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework.

Song J, Li F, Takemoto K, Haffari G, Akutsu T, Chou KC, Webb GI. Song J, et al. Among authors: webb gi. J Theor Biol. 2018 Apr 14;443:125-137. doi: 10.1016/j.jtbi.2018.01.023. Epub 2018 Feb 1. J Theor Biol. 2018. PMID: 29408627

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