Alber F - Search Results

1

Comparative 3D genome structure analysis of the fission and the budding yeast.

Gong K, Tjong H, Zhou XJ, Alber F. Gong K, et al. Among authors: alber f. PLoS One. 2015 Mar 23;10(3):e0119672. doi: 10.1371/journal.pone.0119672. eCollection 2015. PLoS One. 2015. PMID: 25799503 Free PMC article.

2

Exploring the spatial and temporal organization of a cell's proteome.

Beck M, Topf M, Frazier Z, Tjong H, Xu M, Zhang S, Alber F. Beck M, et al. Among authors: alber f. J Struct Biol. 2011 Mar;173(3):483-96. doi: 10.1016/j.jsb.2010.11.011. Epub 2010 Nov 19. J Struct Biol. 2011. PMID: 21094684 Free PMC article. Review.

3

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.

Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L. Kalhor R, et al. Among authors: alber f. Nat Biotechnol. 2011 Dec 25;30(1):90-8. doi: 10.1038/nbt.2057. Nat Biotechnol. 2011. PMID: 22198700 Free PMC article.

4

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast.

Tjong H, Gong K, Chen L, Alber F. Tjong H, et al. Among authors: alber f. Genome Res. 2012 Jul;22(7):1295-305. doi: 10.1101/gr.129437.111. Epub 2012 May 22. Genome Res. 2012. PMID: 22619363 Free PMC article.

5

Zooming in on genome organization.

Zhou XJ, Alber F. Zhou XJ, et al. Among authors: alber f. Nat Methods. 2012 Oct;9(10):961-3. doi: 10.1038/nmeth.2181. Nat Methods. 2012. PMID: 23018997 Free PMC article. No abstract available.

6

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data.

Li W, Gong K, Li Q, Alber F, Zhou XJ. Li W, et al. Among authors: alber f. Bioinformatics. 2015 Mar 15;31(6):960-2. doi: 10.1093/bioinformatics/btu747. Epub 2014 Nov 12. Bioinformatics. 2015. PMID: 25391400 Free PMC article.

7

TopDom: an efficient and deterministic method for identifying topological domains in genomes.

Shin H, Shi Y, Dai C, Tjong H, Gong K, Alber F, Zhou XJ. Shin H, et al. Among authors: alber f. Nucleic Acids Res. 2016 Apr 20;44(7):e70. doi: 10.1093/nar/gkv1505. Epub 2015 Dec 23. Nucleic Acids Res. 2016. PMID: 26704975 Free PMC article.

8

Global reorganization of budding yeast chromosome conformation in different physiological conditions.

Dultz E, Tjong H, Weider E, Herzog M, Young B, Brune C, Müllner D, Loewen C, Alber F, Weis K. Dultz E, et al. Among authors: alber f. J Cell Biol. 2016 Feb 1;212(3):321-34. doi: 10.1083/jcb.201507069. Epub 2016 Jan 25. J Cell Biol. 2016. PMID: 26811423 Free PMC article.

9

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell CA, Chen L, Alber F. Tjong H, et al. Among authors: alber f. Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1663-72. doi: 10.1073/pnas.1512577113. Epub 2016 Mar 7. Proc Natl Acad Sci U S A. 2016. PMID: 26951677 Free PMC article.

10

Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities.

Dai C, Li W, Tjong H, Hao S, Zhou Y, Li Q, Chen L, Zhu B, Alber F, Jasmine Zhou X. Dai C, et al. Among authors: alber f. Nat Commun. 2016 May 31;7:11549. doi: 10.1038/ncomms11549. Nat Commun. 2016. PMID: 27240697 Free PMC article.

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