Orengo CA - Search Results

1

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA. Das S, et al. Among authors: orengo ca. Nucleic Acids Res. 2015 Jul 1;43(W1):W148-53. doi: 10.1093/nar/gkv488. Epub 2015 May 11. Nucleic Acids Res. 2015. PMID: 25964299 Free PMC article.

2

CATH--a hierarchic classification of protein domain structures.

Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. Orengo CA, et al. Structure. 1997 Aug 15;5(8):1093-108. doi: 10.1016/s0969-2126(97)00260-8. Structure. 1997. PMID: 9309224 Free article.

3

The CATH Database provides insights into protein structure/function relationships.

Orengo CA, Pearl FM, Bray JE, Todd AE, Martin AC, Lo Conte L, Thornton JM. Orengo CA, et al. Nucleic Acids Res. 1999 Jan 1;27(1):275-9. doi: 10.1093/nar/27.1.275. Nucleic Acids Res. 1999. PMID: 9847200 Free PMC article.

4

Classifying a protein in the CATH database of domain structures.

Orengo CA, Martin AM, Hutchinson G, Jones S, Jones DT, Michie AD, Swindells MB, Thornton JM. Orengo CA, et al. Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1155-67. doi: 10.1107/s0907444998007501. Acta Crystallogr D Biol Crystallogr. 1998. PMID: 10089492

5

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction.

Orengo CA, Bray JE, Hubbard T, LoConte L, Sillitoe I. Orengo CA, et al. Proteins. 1999;Suppl 3:149-70. doi: 10.1002/(sici)1097-0134(1999)37:3+<149::aid-prot20>3.3.co;2-8. Proteins. 1999. PMID: 10526364

6

Assigning genomic sequences to CATH.

Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2000 Jan 1;28(1):277-82. doi: 10.1093/nar/28.1.277. Nucleic Acids Res. 2000. PMID: 10592246 Free PMC article.

7

VIDA: a virus database system for the organization of animal virus genome open reading frames.

Albà MM, Lee D, Pearl FM, Shepherd AJ, Martin N, Orengo CA, Kellam P. Albà MM, et al. Among authors: orengo ca. Nucleic Acids Res. 2001 Jan 1;29(1):133-6. doi: 10.1093/nar/29.1.133. Nucleic Acids Res. 2001. PMID: 11125070 Free PMC article.

8

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2001 Jan 1;29(1):223-7. doi: 10.1093/nar/29.1.223. Nucleic Acids Res. 2001. PMID: 11125098 Free PMC article.

9

Review: what can structural classifications reveal about protein evolution?

Orengo CA, Sillitoe I, Reeves G, Pearl FM. Orengo CA, et al. J Struct Biol. 2001 May-Jun;134(2-3):145-65. doi: 10.1006/jsbi.2001.4398. J Struct Biol. 2001. PMID: 11551176 Review.

10

The CATH protein family database: a resource for structural and functional annotation of genomes.

Orengo CA, Bray JE, Buchan DW, Harrison A, Lee D, Pearl FM, Sillitoe I, Todd AE, Thornton JM. Orengo CA, et al. Proteomics. 2002 Jan;2(1):11-21. Proteomics. 2002. PMID: 11788987 Review.

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