Cao R - Search Results

1

CONFOLD: Residue-residue contact-guided ab initio protein folding.

Adhikari B, Bhattacharya D, Cao R, Cheng J. Adhikari B, et al. Among authors: cao r. Proteins. 2015 Aug;83(8):1436-49. doi: 10.1002/prot.24829. Epub 2015 Jun 6. Proteins. 2015. PMID: 25974172 Free PMC article.

2

Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks.

Wang Z, Cao R, Cheng J. Wang Z, et al. Among authors: cao r. BMC Bioinformatics. 2013;14 Suppl 3(Suppl 3):S3. doi: 10.1186/1471-2105-14-S3-S3. Epub 2013 Feb 28. BMC Bioinformatics. 2013. PMID: 23514381 Free PMC article.

3

The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types.

Wang Z, Cao R, Taylor K, Briley A, Caldwell C, Cheng J. Wang Z, et al. Among authors: cao r. PLoS One. 2013;8(3):e58793. doi: 10.1371/journal.pone.0058793. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536826 Free PMC article.

4

The MULTICOM protein tertiary structure prediction system.

Li J, Bhattacharya D, Cao R, Adhikari B, Deng X, Eickholt J, Cheng J. Li J, et al. Among authors: cao r. Methods Mol Biol. 2014;1137:29-41. doi: 10.1007/978-1-4939-0366-5_3. Methods Mol Biol. 2014. PMID: 24573472

5

Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experiment.

Cao R, Wang Z, Cheng J. Cao R, et al. BMC Struct Biol. 2014 Apr 15;14:13. doi: 10.1186/1472-6807-14-13. BMC Struct Biol. 2014. PMID: 24731387 Free PMC article.

6

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines.

Cao R, Wang Z, Wang Y, Cheng J. Cao R, et al. BMC Bioinformatics. 2014 Apr 28;15:120. doi: 10.1186/1471-2105-15-120. BMC Bioinformatics. 2014. PMID: 24776231 Free PMC article.

7

Large-scale model quality assessment for improving protein tertiary structure prediction.

Cao R, Bhattacharya D, Adhikari B, Li J, Cheng J. Cao R, et al. Bioinformatics. 2015 Jun 15;31(12):i116-23. doi: 10.1093/bioinformatics/btv235. Bioinformatics. 2015. PMID: 26072473 Free PMC article.

8

Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11.

Cao R, Bhattacharya D, Adhikari B, Li J, Cheng J. Cao R, et al. Proteins. 2016 Sep;84 Suppl 1(Suppl 1):247-59. doi: 10.1002/prot.24924. Epub 2015 Sep 29. Proteins. 2016. PMID: 26369671 Free PMC article.

9

Integrated protein function prediction by mining function associations, sequences, and protein-protein and gene-gene interaction networks.

Cao R, Cheng J. Cao R, et al. Methods. 2016 Jan 15;93:84-91. doi: 10.1016/j.ymeth.2015.09.011. Epub 2015 Sep 11. Methods. 2016. PMID: 26370280 Free PMC article.

10

Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data.

Nowotny J, Ahmed S, Xu L, Oluwadare O, Chen H, Hensley N, Trieu T, Cao R, Cheng J. Nowotny J, et al. Among authors: cao r. BMC Bioinformatics. 2015 Oct 23;16:338. doi: 10.1186/s12859-015-0772-0. BMC Bioinformatics. 2015. PMID: 26493399 Free PMC article.

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