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JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A. Rodriguez N, et al. Among authors: myers cj. Bioinformatics. 2015 Oct 15;31(20):3383-6. doi: 10.1093/bioinformatics/btv341. Epub 2015 Jun 16. Bioinformatics. 2015. PMID: 26079347 Free PMC article.
The synthetic biology open language.
Myers C, Clancy K, Misirli G, Oberortner E, Pocock M, Quinn J, Roehner N, Sauro HM. Myers C, et al. Methods Mol Biol. 2015;1244:323-36. doi: 10.1007/978-1-4939-1878-2_16. Methods Mol Biol. 2015. PMID: 25487105
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative.
Hucka M, Nickerson DP, Bader GD, Bergmann FT, Cooper J, Demir E, Garny A, Golebiewski M, Myers CJ, Schreiber F, Waltemath D, Le Novère N. Hucka M, et al. Among authors: myers cj. Front Bioeng Biotechnol. 2015 Feb 24;3:19. doi: 10.3389/fbioe.2015.00019. eCollection 2015. Front Bioeng Biotechnol. 2015. PMID: 25759811 Free PMC article. Review.
Specifications of Standards in Systems and Synthetic Biology.
Schreiber F, Bader GD, Golebiewski M, Hucka M, Kormeier B, Le Novère N, Myers C, Nickerson D, Sommer B, Waltemath D, Weise S. Schreiber F, et al. J Integr Bioinform. 2015 Sep 4;12(2):258. doi: 10.2390/biecoll-jib-2015-258. J Integr Bioinform. 2015. PMID: 26528556 Free PMC article.
SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.
Smith LP, Hucka M, Hoops S, Finney A, Ginkel M, Myers CJ, Moraru I, Liebermeister W. Smith LP, et al. Among authors: myers cj. J Integr Bioinform. 2015 Sep 4;12(2):268. doi: 10.2390/biecoll-jib-2015-268. J Integr Bioinform. 2015. PMID: 26528566 Free PMC article.
144 results