Swat MH - Search Results

1

Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D.

Swat MH, Thomas GL, Shirinifard A, Clendenon SG, Glazier JA. Swat MH, et al. PLoS One. 2015 Jun 17;10(6):e0127972. doi: 10.1371/journal.pone.0127972. eCollection 2015. PLoS One. 2015. PMID: 26083246 Free PMC article.

2

Multi-scale modeling of tissues using CompuCell3D.

Swat MH, Thomas GL, Belmonte JM, Shirinifard A, Hmeljak D, Glazier JA. Swat MH, et al. Methods Cell Biol. 2012;110:325-66. doi: 10.1016/B978-0-12-388403-9.00013-8. Methods Cell Biol. 2012. PMID: 22482955 Free PMC article.

3

Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.

Popławski NJ, Shirinifard A, Swat M, Glazier JA. Popławski NJ, et al. Math Biosci Eng. 2008 Apr;5(2):355-88. doi: 10.3934/mbe.2008.5.355. Math Biosci Eng. 2008. PMID: 18613738 Free PMC article.

4

3D multi-cell simulation of tumor growth and angiogenesis.

Shirinifard A, Gens JS, Zaitlen BL, Popławski NJ, Swat M, Glazier JA. Shirinifard A, et al. PLoS One. 2009 Oct 16;4(10):e7190. doi: 10.1371/journal.pone.0007190. PLoS One. 2009. PMID: 19834621 Free PMC article.

5

Front instabilities and invasiveness of simulated 3D avascular tumors.

Poplawski NJ, Shirinifard A, Agero U, Gens JS, Swat M, Glazier JA. Poplawski NJ, et al. PLoS One. 2010 May 26;5(5):e10641. doi: 10.1371/journal.pone.0010641. PLoS One. 2010. PMID: 20520818 Free PMC article.

6

Multicell simulations of development and disease using the CompuCell3D simulation environment.

Swat MH, Hester SD, Balter AI, Heiland RW, Zaitlen BL, Glazier JA. Swat MH, et al. Methods Mol Biol. 2009;500:361-428. doi: 10.1007/978-1-59745-525-1_13. Methods Mol Biol. 2009. PMID: 19399437 Free PMC article.

7

Virtual-tissue computer simulations define the roles of cell adhesion and proliferation in the onset of kidney cystic disease.

Belmonte JM, Clendenon SG, Oliveira GM, Swat MH, Greene EV, Jeyaraman S, Glazier JA, Bacallao RL. Belmonte JM, et al. Among authors: swat mh. Mol Biol Cell. 2016 Nov 7;27(22):3673-3685. doi: 10.1091/mbc.E16-01-0059. Epub 2016 May 18. Mol Biol Cell. 2016. PMID: 27193300 Free PMC article.

8

Filopodial-Tension Model of Convergent-Extension of Tissues.

Belmonte JM, Swat MH, Glazier JA. Belmonte JM, et al. Among authors: swat mh. PLoS Comput Biol. 2016 Jun 20;12(6):e1004952. doi: 10.1371/journal.pcbi.1004952. eCollection 2016 Jun. PLoS Comput Biol. 2016. PMID: 27322528 Free PMC article.

9

Development of a coupled simulation toolkit for computational radiation biology based on Geant4 and CompuCell3D.

Liu R, Higley KA, Swat MH, Chaplain MAJ, Powathil GG, Glazier JA. Liu R, et al. Among authors: swat mh. Phys Med Biol. 2021 Feb 11;66(4):045026. doi: 10.1088/1361-6560/abd4f9. Phys Med Biol. 2021. PMID: 33339019

10

Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick.

Glazier JA, Zhang Y, Swat M, Zaitlen B, Schnell S. Glazier JA, et al. Curr Top Dev Biol. 2008;81:205-47. doi: 10.1016/S0070-2153(07)81007-6. Curr Top Dev Biol. 2008. PMID: 18023729 Free PMC article. Review.

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