Shi Y - Search Results

1

The exonuclease activity of DNA polymerase γ is required for ligation during mitochondrial DNA replication.

Macao B, Uhler JP, Siibak T, Zhu X, Shi Y, Sheng W, Olsson M, Stewart JB, Gustafsson CM, Falkenberg M. Macao B, et al. Among authors: shi y. Nat Commun. 2015 Jun 22;6:7303. doi: 10.1038/ncomms8303. Nat Commun. 2015. PMID: 26095671 Free PMC article.

2

In vivo occupancy of mitochondrial single-stranded DNA binding protein supports the strand displacement mode of DNA replication.

Miralles Fusté J, Shi Y, Wanrooij S, Zhu X, Jemt E, Persson Ö, Sabouri N, Gustafsson CM, Falkenberg M. Miralles Fusté J, et al. Among authors: shi y. PLoS Genet. 2014 Dec 4;10(12):e1004832. doi: 10.1371/journal.pgen.1004832. eCollection 2014 Dec. PLoS Genet. 2014. PMID: 25474639 Free PMC article.

3

Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.

Jemt E, Persson Ö, Shi Y, Mehmedovic M, Uhler JP, Dávila López M, Freyer C, Gustafsson CM, Samuelsson T, Falkenberg M. Jemt E, et al. Among authors: shi y. Nucleic Acids Res. 2015 Oct 30;43(19):9262-75. doi: 10.1093/nar/gkv804. Epub 2015 Aug 7. Nucleic Acids Res. 2015. PMID: 26253742 Free PMC article.

4

The mitochondrial single-stranded DNA binding protein is essential for initiation of mtDNA replication.

Jiang M, Xie X, Zhu X, Jiang S, Milenkovic D, Misic J, Shi Y, Tandukar N, Li X, Atanassov I, Jenninger L, Hoberg E, Albarran-Gutierrez S, Szilagyi Z, Macao B, Siira SJ, Carelli V, Griffith JD, Gustafsson CM, Nicholls TJ, Filipovska A, Larsson NG, Falkenberg M. Jiang M, et al. Among authors: shi y. Sci Adv. 2021 Jul 2;7(27):eabf8631. doi: 10.1126/sciadv.abf8631. Print 2021 Jul. Sci Adv. 2021. PMID: 34215584 Free PMC article.

5

Conserved sequence box II directs transcription termination and primer formation in mitochondria.

Pham XH, Farge G, Shi Y, Gaspari M, Gustafsson CM, Falkenberg M. Pham XH, et al. Among authors: shi y. J Biol Chem. 2006 Aug 25;281(34):24647-52. doi: 10.1074/jbc.M602429200. Epub 2006 Jun 21. J Biol Chem. 2006. PMID: 16790426 Free article.

6

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.

Wanrooij S, Fusté JM, Farge G, Shi Y, Gustafsson CM, Falkenberg M. Wanrooij S, et al. Among authors: shi y. Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11122-7. doi: 10.1073/pnas.0805399105. Epub 2008 Aug 6. Proc Natl Acad Sci U S A. 2008. PMID: 18685103 Free PMC article.

7

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.

Fusté JM, Wanrooij S, Jemt E, Granycome CE, Cluett TJ, Shi Y, Atanassova N, Holt IJ, Gustafsson CM, Falkenberg M. Fusté JM, et al. Among authors: shi y. Mol Cell. 2010 Jan 15;37(1):67-78. doi: 10.1016/j.molcel.2009.12.021. Mol Cell. 2010. PMID: 20129056 Free article.

8

Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro.

Litonin D, Sologub M, Shi Y, Savkina M, Anikin M, Falkenberg M, Gustafsson CM, Temiakov D. Litonin D, et al. Among authors: shi y. J Biol Chem. 2010 Jun 11;285(24):18129-33. doi: 10.1074/jbc.C110.128918. Epub 2010 Apr 21. J Biol Chem. 2010. PMID: 20410300 Free PMC article.

9

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.

Wanrooij PH, Uhler JP, Shi Y, Westerlund F, Falkenberg M, Gustafsson CM. Wanrooij PH, et al. Among authors: shi y. Nucleic Acids Res. 2012 Nov 1;40(20):10334-44. doi: 10.1093/nar/gks802. Epub 2012 Sep 10. Nucleic Acids Res. 2012. PMID: 22965135 Free PMC article.

10

Mammalian transcription factor A is a core component of the mitochondrial transcription machinery.

Shi Y, Dierckx A, Wanrooij PH, Wanrooij S, Larsson NG, Wilhelmsson LM, Falkenberg M, Gustafsson CM. Shi Y, et al. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16510-5. doi: 10.1073/pnas.1119738109. Epub 2012 Sep 24. Proc Natl Acad Sci U S A. 2012. PMID: 23012404 Free PMC article.

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