Stephens ZD - Search Results

1

Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, Efron MJ, Iyer R, Schatz MC, Sinha S, Robinson GE. Stephens ZD, et al. PLoS Biol. 2015 Jul 7;13(7):e1002195. doi: 10.1371/journal.pbio.1002195. eCollection 2015 Jul. PLoS Biol. 2015. PMID: 26151137 Free PMC article.

2

Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models.

Stephens ZD, Hudson ME, Mainzer LS, Taschuk M, Weber MR, Iyer RK. Stephens ZD, et al. PLoS One. 2016 Nov 28;11(11):e0167047. doi: 10.1371/journal.pone.0167047. eCollection 2016. PLoS One. 2016. PMID: 27893777 Free PMC article.

3

Detection and visualization of complex structural variants from long reads.

Stephens Z, Wang C, Iyer RK, Kocher JP. Stephens Z, et al. BMC Bioinformatics. 2018 Dec 21;19(Suppl 20):508. doi: 10.1186/s12859-018-2539-x. BMC Bioinformatics. 2018. PMID: 30577744 Free PMC article.

4

Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data.

Stephens Z, O'Brien D, Dehankar M, Roberts LR, Iyer RK, Kocher JP. Stephens Z, et al. PLoS One. 2021 Sep 22;16(9):e0250915. doi: 10.1371/journal.pone.0250915. eCollection 2021. PLoS One. 2021. PMID: 34550971 Free PMC article.

5

PB-Motif-A Method for Identifying Gene/Pseudogene Rearrangements With Long Reads: An Application to CYP21A2 Genotyping.

Stephens Z, Milosevic D, Kipp B, Grebe S, Iyer RK, Kocher JA. Stephens Z, et al. Front Genet. 2021 Jul 28;12:716586. doi: 10.3389/fgene.2021.716586. eCollection 2021. Front Genet. 2021. PMID: 34394200 Free PMC article.

6

Telogator: a method for reporting chromosome-specific telomere lengths from long reads.

Stephens Z, Ferrer A, Boardman L, Iyer RK, Kocher JA. Stephens Z, et al. Bioinformatics. 2022 Mar 28;38(7):1788-1793. doi: 10.1093/bioinformatics/btac005. Bioinformatics. 2022. PMID: 35022670 Free PMC article.

7

CRISPR/Cas9-mediated excision of ALS/FTD-causing hexanucleotide repeat expansion in C9ORF72 rescues major disease mechanisms in vivo and in vitro.

Meijboom KE, Abdallah A, Fordham NP, Nagase H, Rodriguez T, Kraus C, Gendron TF, Krishnan G, Esanov R, Andrade NS, Rybin MJ, Ramic M, Stephens ZD, Edraki A, Blackwood MT, Kahriman A, Henninger N, Kocher JA, Benatar M, Brodsky MH, Petrucelli L, Gao FB, Sontheimer EJ, Brown RH, Zeier Z, Mueller C. Meijboom KE, et al. Among authors: stephens zd. Nat Commun. 2022 Oct 21;13(1):6286. doi: 10.1038/s41467-022-33332-7. Nat Commun. 2022. PMID: 36271076 Free PMC article.

8

Experimental and Computational Approaches to Measure Telomere Length: Recent Advances and Future Directions.

Ferrer A, Stephens ZD, Kocher JA. Ferrer A, et al. Among authors: stephens zd. Curr Hematol Malig Rep. 2023 Dec;18(6):284-291. doi: 10.1007/s11899-023-00717-4. Epub 2023 Nov 10. Curr Hematol Malig Rep. 2023. PMID: 37947937 Free PMC article. Review.

9

Composite WO3/TiO2 nanostructures for high electrochromic activity.

Reyes-Gil KR, Stephens ZD, Stavila V, Robinson DB. Reyes-Gil KR, et al. Among authors: stephens zd. ACS Appl Mater Interfaces. 2015 Feb 4;7(4):2202-13. doi: 10.1021/am5050696. Epub 2015 Jan 20. ACS Appl Mater Interfaces. 2015. PMID: 25562778

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