Bessant C - Search Results

1

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics.

Fan J, Saha S, Barker G, Heesom KJ, Ghali F, Jones AR, Matthews DA, Bessant C. Fan J, et al. Among authors: bessant c. Mol Cell Proteomics. 2015 Nov;14(11):3087-93. doi: 10.1074/mcp.O115.048777. Epub 2015 Aug 12. Mol Cell Proteomics. 2015. PMID: 26269333 Free PMC article.

2

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions.

Mead JA, Bianco L, Ottone V, Barton C, Kay RG, Lilley KS, Bond NJ, Bessant C. Mead JA, et al. Among authors: bessant c. Mol Cell Proteomics. 2009 Apr;8(4):696-705. doi: 10.1074/mcp.M800192-MCP200. Epub 2008 Nov 15. Mol Cell Proteomics. 2009. PMID: 19011259 Free PMC article.

3

MRMaid 2.0: mining PRIDE for evidence-based SRM transitions.

Fan J, Mohareb F, Bond NJ, Lilley KS, Bessant C. Fan J, et al. Among authors: bessant c. OMICS. 2012 Sep;16(9):483-8. doi: 10.1089/omi.2011.0143. Epub 2012 Jul 17. OMICS. 2012. PMID: 22804252 Free PMC article.

4

A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis.

Gonzalez-Galarza FF, Lawless C, Hubbard SJ, Fan J, Bessant C, Hermjakob H, Jones AR. Gonzalez-Galarza FF, et al. Among authors: bessant c. OMICS. 2012 Sep;16(9):431-42. doi: 10.1089/omi.2012.0022. Epub 2012 Jul 17. OMICS. 2012. PMID: 22804616 Free PMC article.

5

MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species.

Fan J, Mohareb F, Jones AM, Bessant C. Fan J, et al. Among authors: bessant c. Front Plant Sci. 2012 Jul 20;3:164. doi: 10.3389/fpls.2012.00164. eCollection 2012. Front Plant Sci. 2012. PMID: 22833751 Free PMC article.

6

De novo derivation of proteomes from transcriptomes for transcript and protein identification.

Evans VC, Barker G, Heesom KJ, Fan J, Bessant C, Matthews DA. Evans VC, et al. Among authors: bessant c. Nat Methods. 2012 Dec;9(12):1207-11. doi: 10.1038/nmeth.2227. Epub 2012 Nov 11. Nat Methods. 2012. PMID: 23142869 Free PMC article.

7

A tutorial for software development in quantitative proteomics using PSI standard formats.

Gonzalez-Galarza FF, Qi D, Fan J, Bessant C, Jones AR. Gonzalez-Galarza FF, et al. Among authors: bessant c. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):88-97. doi: 10.1016/j.bbapap.2013.04.004. Epub 2013 Apr 12. Biochim Biophys Acta. 2014. PMID: 23584085 Free PMC article. Review.

8

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA, Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR. Walzer M, et al. Among authors: bessant c. Mol Cell Proteomics. 2013 Aug;12(8):2332-40. doi: 10.1074/mcp.O113.028506. Epub 2013 Apr 18. Mol Cell Proteomics. 2013. PMID: 23599424 Free PMC article.

9

Computational approaches to selected reaction monitoring assay design.

Bessant C, Fan J. Bessant C, et al. Methods Mol Biol. 2013;1007:219-35. doi: 10.1007/978-1-62703-392-3_9. Methods Mol Biol. 2013. PMID: 23666728

10

The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.

Qi D, Zhang H, Fan J, Perkins S, Pisconti A, Simpson DM, Bessant C, Hubbard S, Jones AR. Qi D, et al. Among authors: bessant c. Proteomics. 2015 Sep;15(18):3152-62. doi: 10.1002/pmic.201400535. Epub 2015 Jul 14. Proteomics. 2015. PMID: 26037908 Free PMC article.

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