Cope L - Search Results

1

A multi-omic analysis of human naïve CD4+ T cells.

Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, Sahasrabuddhe NA, Raju R, Bowman C, Danilova L, Cutler J, Kelkar DS, Drake CG, Prasad TS, Marchionni L, Murakami PN, Scott AF, Shi L, Thierry-Mieg J, Thierry-Mieg D, Irizarry R, Cope L, Ishihama Y, Wang C, Gowda H, Pandey A. Mitchell CJ, et al. Among authors: cope l. BMC Syst Biol. 2015 Nov 6;9:75. doi: 10.1186/s12918-015-0225-4. BMC Syst Biol. 2015. PMID: 26542228 Free PMC article.

2

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Irizarry RA, et al. Nucleic Acids Res. 2003 Feb 15;31(4):e15. doi: 10.1093/nar/gng015. Nucleic Acids Res. 2003. PMID: 12582260 Free PMC article.

3

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP. Cope LM, et al. Bioinformatics. 2004 Feb 12;20(3):323-31. doi: 10.1093/bioinformatics/btg410. Bioinformatics. 2004. PMID: 14960458

4

Oligonucleotide-microarray analysis of peripheral-blood lymphocytes in severe asthma.

Hansel NN, Hilmer SC, Georas SN, Cope LM, Guo J, Irizarry RA, Diette GB. Hansel NN, et al. J Lab Clin Med. 2005 May;145(5):263-74. doi: 10.1016/j.lab.2005.02.010. J Lab Clin Med. 2005. PMID: 15902098

5

Analysis of Affymetrix GeneChip data using amplified RNA.

Cope L, Hartman SM, Göhlmann HW, Tiesman JP, Irizarry RA. Cope L, et al. Biotechniques. 2006 Feb;40(2):165-6, 168, 170. doi: 10.2144/000112057. Biotechniques. 2006. PMID: 16526405 Free article.

6

Feature-level exploration of a published Affymetrix GeneChip control dataset.

Irizarry RA, Cope LM, Wu Z. Irizarry RA, et al. Genome Biol. 2006;7(8):404. doi: 10.1186/gb-2006-7-8-404. Genome Biol. 2006. PMID: 16953902 Free PMC article.

7

Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.

Amanchy R, Zhong J, Molina H, Chaerkady R, Iwahori A, Kalume DE, Grønborg M, Joore J, Cope L, Pandey A. Amanchy R, et al. Among authors: cope l. J Proteome Res. 2008 Sep;7(9):3900-10. doi: 10.1021/pr800198w. Epub 2008 Aug 13. J Proteome Res. 2008. PMID: 18698806 Free PMC article.

8

The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.

Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D. Lin X, et al. Among authors: cope l. BMC Bioinformatics. 2009 Aug 20;10:256. doi: 10.1186/1471-2105-10-256. BMC Bioinformatics. 2009. PMID: 19695104 Free PMC article.

9

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome.

Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J, Beer MA, Cope L, Pandey A. Amanchy R, et al. Among authors: cope l. J Proteomics Bioinform. 2011;4(2):22-35. doi: 10.4172/jpb.1000163. J Proteomics Bioinform. 2011. PMID: 21720494 Free PMC article.

10

Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis.

Fertig EJ, Markovic A, Danilova LV, Gaykalova DA, Cope L, Chung CH, Ochs MF, Califano JA. Fertig EJ, et al. Among authors: cope l. PLoS One. 2013 Nov 4;8(11):e78127. doi: 10.1371/journal.pone.0078127. eCollection 2013. PLoS One. 2013. PMID: 24223768 Free PMC article.

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