Chen M - Search Results

1

Global copy number profiling of cancer genomes.

Wang X, Chen M, Yu X, Pornputtapong N, Chen H, Zhang NR, Powers RS, Krauthammer M. Wang X, et al. Among authors: chen m, chen h. Bioinformatics. 2016 Mar 15;32(6):926-8. doi: 10.1093/bioinformatics/btv676. Epub 2015 Nov 16. Bioinformatics. 2016. PMID: 26576652 Free PMC article.

2

SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data.

Chen M, Gunel M, Zhao H. Chen M, et al. PLoS One. 2013 Nov 12;8(11):e78143. doi: 10.1371/journal.pone.0078143. eCollection 2013. PLoS One. 2013. PMID: 24265680 Free PMC article.

3

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling.

Silva GO, Siegel MB, Mose LE, Parker JS, Sun W, Perou CM, Chen M. Silva GO, et al. Among authors: chen m. Genome Biol. 2017 Apr 8;18(1):66. doi: 10.1186/s13059-017-1193-3. Genome Biol. 2017. PMID: 28390427 Free PMC article.

4

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.

Xu Z, Zhang G, Jin F, Chen M, Furey TS, Sullivan PF, Qin Z, Hu M, Li Y. Xu Z, et al. Among authors: chen m. Bioinformatics. 2016 Mar 1;32(5):650-6. doi: 10.1093/bioinformatics/btv650. Epub 2015 Nov 4. Bioinformatics. 2016. PMID: 26543175 Free PMC article.

5

The association between copy number aberration, DNA methylation and gene expression in tumor samples.

Sun W, Bunn P, Jin C, Little P, Zhabotynsky V, Perou CM, Hayes DN, Chen M, Lin DY. Sun W, et al. Among authors: chen m. Nucleic Acids Res. 2018 Apr 6;46(6):3009-3018. doi: 10.1093/nar/gky131. Nucleic Acids Res. 2018. PMID: 29529299 Free PMC article.

6

CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information.

Yang C, Wan X, Lin X, Chen M, Zhou X, Liu J. Yang C, et al. Among authors: chen m. Bioinformatics. 2019 May 15;35(10):1644-1652. doi: 10.1093/bioinformatics/bty865. Bioinformatics. 2019. PMID: 30295737

7

Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer.

Siegel MB, He X, Hoadley KA, Hoyle A, Pearce JB, Garrett AL, Kumar S, Moylan VJ, Brady CM, Van Swearingen AE, Marron D, Gupta GP, Thorne LB, Kieran N, Livasy C, Mardis ER, Parker JS, Chen M, Anders CK, Carey LA, Perou CM. Siegel MB, et al. Among authors: chen m. J Clin Invest. 2018 Apr 2;128(4):1371-1383. doi: 10.1172/JCI96153. Epub 2018 Feb 26. J Clin Invest. 2018. PMID: 29480819 Free PMC article. Clinical Trial.

8

Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies.

Sun S, Zhu J, Mozaffari S, Ober C, Chen M, Zhou X. Sun S, et al. Among authors: chen m. Bioinformatics. 2019 Feb 1;35(3):487-496. doi: 10.1093/bioinformatics/bty644. Bioinformatics. 2019. PMID: 30020412 Free PMC article.

9

Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data.

Wang T, Chen M, Zhao H. Wang T, et al. Among authors: chen m. Biometrics. 2016 Jun;72(2):354-63. doi: 10.1111/biom.12422. Epub 2015 Oct 4. Biometrics. 2016. PMID: 26433612 Free PMC article.

10

Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations.

Chang J, Tan W, Ling Z, Xi R, Shao M, Chen M, Luo Y, Zhao Y, Liu Y, Huang X, Xia Y, Hu J, Parker JS, Marron D, Cui Q, Peng L, Chu J, Li H, Du Z, Han Y, Tan W, Liu Z, Zhan Q, Li Y, Mao W, Wu C, Lin D. Chang J, et al. Among authors: chen m. Nat Commun. 2017 May 26;8:15290. doi: 10.1038/ncomms15290. Nat Commun. 2017. PMID: 28548104 Free PMC article.

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