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Effects of cytosine methylation on transcription factor binding sites.
Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium. Medvedeva YA, et al. Among authors: bajic vb. BMC Genomics. 2014 Mar 26;15:119. doi: 10.1186/1471-2164-15-119. BMC Genomics. 2014. PMID: 24669864 Free PMC article.
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Among authors: bajic vb. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.
Mutations and binding sites of human transcription factors.
Kamanu FK, Medvedeva YA, Schaefer U, Jankovic BR, Archer JA, Bajic VB. Kamanu FK, et al. Among authors: bajic vb. Front Genet. 2012 Jun 1;3:100. doi: 10.3389/fgene.2012.00100. eCollection 2012. Front Genet. 2012. PMID: 22670148 Free PMC article.
DENdb: database of integrated human enhancers.
Ashoor H, Kleftogiannis D, Radovanovic A, Bajic VB. Ashoor H, et al. Among authors: bajic vb. Database (Oxford). 2015 Sep 5;2015:bav085. doi: 10.1093/database/bav085. Print 2015. Database (Oxford). 2015. PMID: 26342387 Free PMC article.
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.
Alam T, Uludag M, Essack M, Salhi A, Ashoor H, Hanks JB, Kapfer C, Mineta K, Gojobori T, Bajic VB. Alam T, et al. Among authors: bajic vb. Nucleic Acids Res. 2017 Mar 17;45(5):2838-2848. doi: 10.1093/nar/gkw973. Nucleic Acids Res. 2017. PMID: 27924038 Free PMC article.
232 results