Bongen E - Search Results

1

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses.

Andres-Terre M, McGuire HM, Pouliot Y, Bongen E, Sweeney TE, Tato CM, Khatri P. Andres-Terre M, et al. Among authors: bongen e. Immunity. 2015 Dec 15;43(6):1199-211. doi: 10.1016/j.immuni.2015.11.003. Immunity. 2015. PMID: 26682989 Free PMC article.

2

EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.

Haynes WA, Vallania F, Liu C, Bongen E, Tomczak A, Andres-Terrè M, Lofgren S, Tam A, Deisseroth CA, Li MD, Sweeney TE, Khatri P. Haynes WA, et al. Among authors: bongen e. Pac Symp Biocomput. 2017;22:144-153. doi: 10.1142/9789813207813_0015. Pac Symp Biocomput. 2017. PMID: 27896970 Free PMC article.

3

KLRD1-expressing natural killer cells predict influenza susceptibility.

Bongen E, Vallania F, Utz PJ, Khatri P. Bongen E, et al. Genome Med. 2018 Jun 14;10(1):45. doi: 10.1186/s13073-018-0554-1. Genome Med. 2018. PMID: 29898768 Free PMC article.

4

Integrated, multicohort analysis reveals unified signature of systemic lupus erythematosus.

Haynes WA, Haddon DJ, Diep VK, Khatri A, Bongen E, Yiu G, Balboni I, Bolen CR, Mao R, Utz PJ, Khatri P. Haynes WA, et al. Among authors: bongen e. JCI Insight. 2020 Feb 27;5(4):e122312. doi: 10.1172/jci.insight.122312. JCI Insight. 2020. PMID: 31971918 Free PMC article.

5

Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection.

Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. Bongen E, et al. Cell Rep. 2019 Nov 12;29(7):1961-1973.e4. doi: 10.1016/j.celrep.2019.10.019. Cell Rep. 2019. PMID: 31722210 Free PMC article.

6

Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases.

Vallania F, Tam A, Lofgren S, Schaffert S, Azad TD, Bongen E, Haynes W, Alsup M, Alonso M, Davis M, Engleman E, Khatri P. Vallania F, et al. Among authors: bongen e. Nat Commun. 2018 Nov 9;9(1):4735. doi: 10.1038/s41467-018-07242-6. Nat Commun. 2018. PMID: 30413720 Free PMC article.

7

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection.

Fourati S, Talla A, Mahmoudian M, Burkhart JG, Klén R, Henao R, Yu T, Aydın Z, Yeung KY, Ahsen ME, Almugbel R, Jahandideh S, Liang X, Nordling TEM, Shiga M, Stanescu A, Vogel R; Respiratory Viral DREAM Challenge Consortium; Pandey G, Chiu C, McClain MT, Woods CW, Ginsburg GS, Elo LL, Tsalik EL, Mangravite LM, Sieberts SK. Fourati S, et al. Nat Commun. 2018 Oct 24;9(1):4418. doi: 10.1038/s41467-018-06735-8. Nat Commun. 2018. PMID: 30356117 Free PMC article.

8

Machine learning to predict lung nodule biopsy method using CT image features: A pilot study.

Sumathipala Y, Shafiq M, Bongen E, Brinton C, Paik D. Sumathipala Y, et al. Among authors: bongen e. Comput Med Imaging Graph. 2019 Jan;71:1-8. doi: 10.1016/j.compmedimag.2018.10.006. Epub 2018 Nov 3. Comput Med Imaging Graph. 2019. PMID: 30448741

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