O'Connell MJ - Search Results

1

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference.

Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. Tarver JE, et al. Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261. Genome Biol Evol. 2016. PMID: 26733575 Free PMC article.

2

Heterogeneous models place the root of the placental mammal phylogeny.

Morgan CC, Foster PG, Webb AE, Pisani D, McInerney JO, O'Connell MJ. Morgan CC, et al. Mol Biol Evol. 2013 Sep;30(9):2145-56. doi: 10.1093/molbev/mst117. Epub 2013 Jun 29. Mol Biol Evol. 2013. PMID: 23813979 Free PMC article.

3

A pluralistic account of homology: adapting the models to the data.

Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO. Haggerty LS, et al. Mol Biol Evol. 2014 Mar;31(3):501-16. doi: 10.1093/molbev/mst228. Epub 2013 Nov 22. Mol Biol Evol. 2014. PMID: 24273322 Free PMC article. Review.

4

The hybrid nature of the Eukaryota and a consilient view of life on Earth.

McInerney JO, O'Connell MJ, Pisani D. McInerney JO, et al. Nat Rev Microbiol. 2014 Jun;12(6):449-55. doi: 10.1038/nrmicro3271. Epub 2014 May 12. Nat Rev Microbiol. 2014. PMID: 24814066 Review.

5

The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data.

McInerney J, Pisani D, O'Connell MJ. McInerney J, et al. Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140323. doi: 10.1098/rstb.2014.0323. Philos Trans R Soc Lond B Biol Sci. 2015. PMID: 26323755 Free PMC article. Review.

6

Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics.

Siu-Ting K, Torres-Sánchez M, San Mauro D, Wilcockson D, Wilkinson M, Pisani D, O'Connell MJ, Creevey CJ. Siu-Ting K, et al. Mol Biol Evol. 2019 Jun 1;36(6):1344-1356. doi: 10.1093/molbev/msz067. Mol Biol Evol. 2019. PMID: 30903171 Free PMC article.

7

Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human.

McCartney AM, Hyland EM, Cormican P, Moran RJ, Webb AE, Lee KD, Hernandez-Rodriguez J, Prado-Martinez J, Creevey CJ, Aspden JL, McInerney JO, Marques-Bonet T, O'Connell MJ. McCartney AM, et al. Genome Biol Evol. 2019 Sep 1;11(9):2678-2690. doi: 10.1093/gbe/evz163. Genome Biol Evol. 2019. PMID: 31400206 Free PMC article.

8

The Public Goods Hypothesis for the evolution of life on Earth.

McInerney JO, Pisani D, Bapteste E, O'Connell MJ. McInerney JO, et al. Biol Direct. 2011 Aug 23;6:41. doi: 10.1186/1745-6150-6-41. Biol Direct. 2011. PMID: 21861918 Free PMC article.

9

A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with protein-encoding imprinted orthologous genes in placental mammals.

O'Connell MJ, Loughran NB, Walsh TA, Donoghue MT, Schmid KJ, Spillane C. O'Connell MJ, et al. Mamm Genome. 2010 Oct;21(9-10):486-98. doi: 10.1007/s00335-010-9283-5. Epub 2010 Oct 8. Mamm Genome. 2010. PMID: 20931201

10

Adaptive Evolution in TRIF Leads to Discordance between Human and Mouse Innate Immune Signaling.

Hyland EM, Webb AE, Kennedy KF, Gerek Ince ZN, Loscher CE, O'Connell MJ. Hyland EM, et al. Genome Biol Evol. 2021 Dec 1;13(12):evab268. doi: 10.1093/gbe/evab268. Genome Biol Evol. 2021. PMID: 34893845 Free PMC article.

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