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102 results

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Page 1
Nanopore sequencing detects structural variants in cancer.
Norris AL, Workman RE, Fan Y, Eshleman JR, Timp W. Norris AL, et al. Among authors: timp w. Cancer Biol Ther. 2016;17(3):246-53. doi: 10.1080/15384047.2016.1139236. Epub 2016 Jan 19. Cancer Biol Ther. 2016. PMID: 26787508 Free PMC article.
The complete sequence of a human Y chromosome.
Rhie A, Nurk S, Cechova M, Hoyt SJ, Taylor DJ, Altemose N, Hook PW, Koren S, Rautiainen M, Alexandrov IA, Allen J, Asri M, Bzikadze AV, Chen NC, Chin CS, Diekhans M, Flicek P, Formenti G, Fungtammasan A, Garcia Giron C, Garrison E, Gershman A, Gerton JL, Grady PGS, Guarracino A, Haggerty L, Halabian R, Hansen NF, Harris R, Hartley GA, Harvey WT, Haukness M, Heinz J, Hourlier T, Hubley RM, Hunt SE, Hwang S, Jain M, Kesharwani RK, Lewis AP, Li H, Logsdon GA, Lucas JK, Makalowski W, Markovic C, Martin FJ, Mc Cartney AM, McCoy RC, McDaniel J, McNulty BM, Medvedev P, Mikheenko A, Munson KM, Murphy TD, Olsen HE, Olson ND, Paulin LF, Porubsky D, Potapova T, Ryabov F, Salzberg SL, Sauria MEG, Sedlazeck FJ, Shafin K, Shepelev VA, Shumate A, Storer JM, Surapaneni L, Taravella Oill AM, Thibaud-Nissen F, Timp W, Tomaszkiewicz M, Vollger MR, Walenz BP, Watwood AC, Weissensteiner MH, Wenger AM, Wilson MA, Zarate S, Zhu Y, Zook JM, Eichler EE, O'Neill RJ, Schatz MC, Miga KH, Makova KD, Phillippy AM. Rhie A, et al. Among authors: timp w. Nature. 2023 Sep;621(7978):344-354. doi: 10.1038/s41586-023-06457-y. Epub 2023 Aug 23. Nature. 2023. PMID: 37612512 Free PMC article.
A Genome Sequence for the Threatened Whitebark Pine.
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Corona LF, Allen BJ, Puiu D, Wright J, Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: timp w. bioRxiv [Preprint]. 2023 Nov 17:2023.11.16.567420. doi: 10.1101/2023.11.16.567420. bioRxiv. 2023. Update in: G3 (Bethesda). 2024 May 7;14(5):jkae061. doi: 10.1093/g3journal/jkae061 PMID: 38014212 Free PMC article. Updated. Preprint.
Tn-seq of the Candida glabrata reference strain CBS138 reveals epigenetic plasticity, structural variation, and intrinsic mechanisms of resistance to micafungin.
Nickels TJ, Gale AP, Harrington AA, Timp W, Cunningham KW. Nickels TJ, et al. Among authors: timp w. bioRxiv [Preprint]. 2024 May 3:2024.05.02.592251. doi: 10.1101/2024.05.02.592251. bioRxiv. 2024. Update in: G3 (Bethesda). 2024 Sep 4;14(9):jkae173. doi: 10.1093/g3journal/jkae173 PMID: 38746084 Free PMC article. Updated. Preprint.
Detecting DNA cytosine methylation using nanopore sequencing.
Simpson JT, Workman RE, Zuzarte PC, David M, Dursi LJ, Timp W. Simpson JT, et al. Among authors: timp w. Nat Methods. 2017 Apr;14(4):407-410. doi: 10.1038/nmeth.4184. Epub 2017 Feb 20. Nat Methods. 2017. PMID: 28218898
Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization.
Credle JJ, Itoh CY, Yuan T, Sharma R, Scott ER, Workman RE, Fan Y, Housseau F, Llosa NJ, Bell WR, Miller H, Zhang SX, Timp W, Larman HB. Credle JJ, et al. Among authors: timp w. Nucleic Acids Res. 2017 Aug 21;45(14):e128. doi: 10.1093/nar/gkx471. Nucleic Acids Res. 2017. PMID: 28854731 Free PMC article.
102 results