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Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma.
Cheng C, Zhou Y, Li H, Xiong T, Li S, Bi Y, Kong P, Wang F, Cui H, Li Y, Fang X, Yan T, Li Y, Wang J, Yang B, Zhang L, Jia Z, Song B, Hu X, Yang J, Qiu H, Zhang G, Liu J, Xu E, Shi R, Zhang Y, Liu H, He C, Zhao Z, Qian Y, Rong R, Han Z, Zhang Y, Luo W, Wang J, Peng S, Yang X, Li X, Li L, Fang H, Liu X, Ma L, Chen Y, Guo S, Chen X, Xi Y, Li G, Liang J, Yang X, Guo J, Jia J, Li Q, Cheng X, Zhan Q, Cui Y. Cheng C, et al. Among authors: li s, li y, li g, li h, li x, li l, li q. Am J Hum Genet. 2016 Feb 4;98(2):256-74. doi: 10.1016/j.ajhg.2015.12.013. Epub 2016 Jan 28. Am J Hum Genet. 2016. PMID: 26833333 Free PMC article.
Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism.
Hu Z, Zhu D, Wang W, Li W, Jia W, Zeng X, Ding W, Yu L, Wang X, Wang L, Shen H, Zhang C, Liu H, Liu X, Zhao Y, Fang X, Li S, Chen W, Tang T, Fu A, Wang Z, Chen G, Gao Q, Li S, Xi L, Wang C, Liao S, Ma X, Wu P, Li K, Wang S, Zhou J, Wang J, Xu X, Wang H, Ma D. Hu Z, et al. Among authors: li s, li w, li k. Nat Genet. 2015 Feb;47(2):158-63. doi: 10.1038/ng.3178. Epub 2015 Jan 12. Nat Genet. 2015. PMID: 25581428
Altered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity.
Han L, Zhao L, Zhou Y, Yang C, Xiong T, Lu L, Deng Y, Luo W, Chen Y, Qiu Q, Shang X, Huang L, Mo Z, Huang S, Huang S, Liu Z, Yang W, Zhai L, Ning Z, Lin C, Huang T, Cheng C, Zhong LLD, Li S, Bian Z, Fang X. Han L, et al. Among authors: li s. ISME J. 2022 Apr;16(4):983-996. doi: 10.1038/s41396-021-01123-5. Epub 2021 Nov 8. ISME J. 2022. PMID: 34750528 Free PMC article.
Characterization of somatic structural variations in 528 Chinese individuals with Esophageal squamous cell carcinoma.
Cui H, Zhou Y, Wang F, Cheng C, Zhang W, Sun R, Zhang L, Bi Y, Guo M, Zhou Y, Wang X, Ren J, Bai R, Ding N, Cheng C, Wang L, Zhuang X, Gao M, Weng Y, Wu Y, Liu H, Li S, Wang S, Cheng X, Cui Y, Liu Z, Zhan Q. Cui H, et al. Among authors: li s. Nat Commun. 2022 Oct 22;13(1):6296. doi: 10.1038/s41467-022-33994-3. Nat Commun. 2022. PMID: 36272974 Free PMC article.
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization.
Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M, Luo Y, Yang Y, Wu Z, Mao L, Wu H, Ling-Hu C, Zhou H, Lin H, González-Morales S, Trejo-Saavedra DL, Tian H, Tang X, Zhao M, Huang Z, Zhou A, Yao X, Cui J, Li W, Chen Z, Feng Y, Niu Y, Bi S, Yang X, Li W, Cai H, Luo X, Montes-Hernández S, Leyva-González MA, Xiong Z, He X, Bai L, Tan S, Tang X, Liu D, Liu J, Zhang S, Chen M, Zhang L, Zhang L, Zhang Y, Liao W, Zhang Y, Wang M, Lv X, Wen B, Liu H, Luan H, Zhang Y, Yang S, Wang X, Xu J, Li X, Li S, Wang J, Palloix A, Bosland PW, Li Y, Krogh A, Rivera-Bustamante RF, Herrera-Estrella L, Yin Y, Yu J, Hu K, Zhang Z. Qin C, et al. Among authors: li s, li y, li w, li x. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5135-40. doi: 10.1073/pnas.1400975111. Epub 2014 Mar 3. Proc Natl Acad Sci U S A. 2014. PMID: 24591624 Free PMC article.
Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.
Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J. Fang X, et al. Among authors: li s, li k. Nat Commun. 2014 Jun 3;5:3966. doi: 10.1038/ncomms4966. Nat Commun. 2014. PMID: 24892994 Free article.
Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies.
Li X, Fan D, Zhang W, Liu G, Zhang L, Zhao L, Fang X, Chen L, Dong Y, Chen Y, Ding Y, Zhao R, Feng M, Zhu Y, Feng Y, Jiang X, Zhu D, Xiang H, Feng X, Li S, Wang J, Zhang G, Kronforst MR, Wang W. Li X, et al. Among authors: li s. Nat Commun. 2015 Sep 10;6:8212. doi: 10.1038/ncomms9212. Nat Commun. 2015. PMID: 26354079 Free PMC article.
A draft genome assembly of the solar-powered sea slug Elysia chlorotica.
Cai H, Li Q, Fang X, Li J, Curtis NE, Altenburger A, Shibata T, Feng M, Maeda T, Schwartz JA, Shigenobu S, Lundholm N, Nishiyama T, Yang H, Hasebe M, Li S, Pierce SK, Wang J. Cai H, et al. Among authors: li s, li j, li q. Sci Data. 2019 Feb 19;6:190022. doi: 10.1038/sdata.2019.22. Sci Data. 2019. PMID: 30778257 Free PMC article.
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