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Sharing Structure and Function in Biological Design with SBOL 2.0.
Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ. Roehner N, et al. Among authors: densmore d. ACS Synth Biol. 2016 Jun 17;5(6):498-506. doi: 10.1021/acssynbio.5b00215. Epub 2016 May 4. ACS Synth Biol. 2016. PMID: 27111421
Automated assembly of standard biological parts.
Leguia M, Brophy J, Densmore D, Anderson JC. Leguia M, et al. Among authors: densmore d. Methods Enzymol. 2011;498:363-97. doi: 10.1016/B978-0-12-385120-8.00016-4. Methods Enzymol. 2011. PMID: 21601686
Pigeon: a design visualizer for synthetic biology.
Bhatia S, Densmore D. Bhatia S, et al. Among authors: densmore d. ACS Synth Biol. 2013 Jun 21;2(6):348-50. doi: 10.1021/sb400024s. Epub 2013 Apr 25. ACS Synth Biol. 2013. PMID: 23654259
Model-driven engineering of gene expression from RNA replicons.
Beal J, Wagner TE, Kitada T, Azizgolshani O, Parker JM, Densmore D, Weiss R. Beal J, et al. Among authors: densmore d. ACS Synth Biol. 2015 Jan 16;4(1):48-56. doi: 10.1021/sb500173f. Epub 2014 Jun 6. ACS Synth Biol. 2015. PMID: 24877739
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: densmore d. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
Owl: electronic datasheet generator.
Appleton E, Tao J, Wheatley FC, Desai DH, Lozanoski TM, Shah PD, Awtry JA, Jin SS, Haddock TL, Densmore DM. Appleton E, et al. Among authors: densmore dm. ACS Synth Biol. 2014 Dec 19;3(12):966-8. doi: 10.1021/sb500053j. ACS Synth Biol. 2014. PMID: 25524100
62 results