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Sharing Structure and Function in Biological Design with SBOL 2.0.
Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ. Roehner N, et al. Among authors: nguyen t. ACS Synth Biol. 2016 Jun 17;5(6):498-506. doi: 10.1021/acssynbio.5b00215. Epub 2016 May 4. ACS Synth Biol. 2016. PMID: 27111421
Synthetic Biology Open Language (SBOL) Version 2.0.0.
Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Bartley B, et al. Among authors: nguyen t. J Integr Bioinform. 2015 Sep 4;12(2):272. doi: 10.2390/biecoll-jib-2015-272. J Integr Bioinform. 2015. PMID: 26528570
Synthetic Biology Open Language (SBOL) Version 2.1.0.
Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari J, Myers C, Sauro H, Wipat A. Beal J, et al. Among authors: nguyen t. J Integr Bioinform. 2016 Dec 18;13(3):291. doi: 10.2390/biecoll-jib-2016-291. J Integr Bioinform. 2016. PMID: 28187407
A standard-enabled workflow for synthetic biology.
Myers CJ, Beal J, Gorochowski TE, Kuwahara H, Madsen C, McLaughlin JA, Mısırlı G, Nguyen T, Oberortner E, Samineni M, Wipat A, Zhang M, Zundel Z. Myers CJ, et al. Among authors: nguyen t. Biochem Soc Trans. 2017 Jun 15;45(3):793-803. doi: 10.1042/BST20160347. Biochem Soc Trans. 2017. PMID: 28620041 Free article. Review.
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A. Cox RS, et al. Among authors: nguyen t. J Integr Bioinform. 2018 Mar 19;15(1):20170074. doi: 10.1515/jib-2017-0074. J Integr Bioinform. 2018. PMID: 29549707 Free PMC article.
Synthetic Biology Open Language (SBOL) Version 2.2.0.
Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari JH, Myers C, Sauro H, Wipat A. Cox RS, et al. Among authors: nguyen t. J Integr Bioinform. 2018 Apr 2;15(1):20180001. doi: 10.1515/jib-2018-0001. J Integr Bioinform. 2018. PMID: 29605823 Free PMC article.
iBioSim 3: A Tool for Model-Based Genetic Circuit Design.
Watanabe L, Nguyen T, Zhang M, Zundel Z, Zhang Z, Madsen C, Roehner N, Myers C. Watanabe L, et al. Among authors: nguyen t. ACS Synth Biol. 2019 Jul 19;8(7):1560-1563. doi: 10.1021/acssynbio.8b00078. Epub 2018 Jul 11. ACS Synth Biol. 2019. PMID: 29944839
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