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Vcfanno: fast, flexible annotation of genetic variants.
Pedersen BS, Layer RM, Quinlan AR. Pedersen BS, et al. Among authors: quinlan ar. Genome Biol. 2016 Jun 1;17(1):118. doi: 10.1186/s13059-016-0973-5. Genome Biol. 2016. PMID: 27250555 Free PMC article.
Extending reference assembly models.
Church DM, Schneider VA, Steinberg KM, Schatz MC, Quinlan AR, Chin CS, Kitts PA, Aken B, Marth GT, Hoffman MM, Herrero J, Mendoza ML, Durbin R, Flicek P. Church DM, et al. Among authors: quinlan ar. Genome Biol. 2015 Jan 24;16(1):13. doi: 10.1186/s13059-015-0587-3. Genome Biol. 2015. PMID: 25651527 Free PMC article.
SpeedSeq: ultra-fast personal genome analysis and interpretation.
Chiang C, Layer RM, Faust GG, Lindberg MR, Rose DB, Garrison EP, Marth GT, Quinlan AR, Hall IM. Chiang C, et al. Among authors: quinlan ar. Nat Methods. 2015 Oct;12(10):966-8. doi: 10.1038/nmeth.3505. Epub 2015 Aug 10. Nat Methods. 2015. PMID: 26258291 Free PMC article.
cyvcf2: fast, flexible variant analysis with Python.
Pedersen BS, Quinlan AR. Pedersen BS, et al. Among authors: quinlan ar. Bioinformatics. 2017 Jun 15;33(12):1867-1869. doi: 10.1093/bioinformatics/btx057. Bioinformatics. 2017. PMID: 28165109 Free PMC article.
Combating subclonal evolution of resistant cancer phenotypes.
Brady SW, McQuerry JA, Qiao Y, Piccolo SR, Shrestha G, Jenkins DF, Layer RM, Pedersen BS, Miller RH, Esch A, Selitsky SR, Parker JS, Anderson LA, Dalley BK, Factor RE, Reddy CB, Boltax JP, Li DY, Moos PJ, Gray JW, Heiser LM, Buys SS, Cohen AL, Johnson WE, Quinlan AR, Marth G, Werner TL, Bild AH. Brady SW, et al. Among authors: quinlan ar. Nat Commun. 2017 Nov 1;8(1):1231. doi: 10.1038/s41467-017-01174-3. Nat Commun. 2017. PMID: 29093439 Free PMC article.
122 results