Serçinoğlu O - Search Results

1

A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis.

Serçinoğlu O, Özcan G, Kabaş ZK, Ozbek P. Serçinoğlu O, et al. J Comput Aided Mol Des. 2016 Jul;30(7):569-81. doi: 10.1007/s10822-016-9934-z. Epub 2016 Aug 9. J Comput Aided Mol Des. 2016. PMID: 27506766

2

Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles.

Serçinoğlu O, Ozbek P. Serçinoğlu O, et al. J Biomol Struct Dyn. 2018 Feb;36(3):724-740. doi: 10.1080/07391102.2017.1295884. Epub 2017 Mar 1. J Biomol Struct Dyn. 2018. PMID: 28278760

3

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations.

Serçinoglu O, Ozbek P. Serçinoglu O, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W554-W562. doi: 10.1093/nar/gky381. Nucleic Acids Res. 2018. PMID: 29800260 Free PMC article.

4

How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study.

Bingöl EN, Serçinoğlu O, Ozbek P. Bingöl EN, et al. Among authors: sercinoglu o. J Biomol Struct Dyn. 2019 Aug;37(13):3456-3466. doi: 10.1080/07391102.2018.1517611. Epub 2018 Nov 17. J Biomol Struct Dyn. 2019. PMID: 30175666

5

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism.

Aydınkal RM, Serçinoğlu O, Ozbek P. Aydınkal RM, et al. Among authors: sercinoglu o. Nucleic Acids Res. 2019 Jul 2;47(W1):W471-W476. doi: 10.1093/nar/gkz390. Nucleic Acids Res. 2019. PMID: 31114881 Free PMC article.

6

Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles.

Bunsuz A, Serçinoğlu O, Ozbek P. Bunsuz A, et al. Among authors: sercinoglu o. Comput Biol Chem. 2020 Feb;84:107195. doi: 10.1016/j.compbiolchem.2019.107195. Epub 2019 Dec 19. Comput Biol Chem. 2020. PMID: 31877499

7

Sequence-structure-function relationships in class I MHC: A local frustration perspective.

Serçinoğlu O, Ozbek P. Serçinoğlu O, et al. PLoS One. 2020 May 18;15(5):e0232849. doi: 10.1371/journal.pone.0232849. eCollection 2020. PLoS One. 2020. PMID: 32421728 Free PMC article.

8

Identification of novel inhibitors of the ABC transporter BmrA.

Serçinoğlu O, Senturk D, Altinisik Kaya FE, Avci FG, Frlan R, Tomašič T, Ozbek P, Orelle C, Jault JM, Sariyar Akbulut B. Serçinoğlu O, et al. Bioorg Chem. 2020 Dec;105:104452. doi: 10.1016/j.bioorg.2020.104452. Epub 2020 Nov 4. Bioorg Chem. 2020. PMID: 33212311

9

Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations.

Bingöl EN, Serçinoğlu O, Ozbek P. Bingöl EN, et al. Among authors: sercinoglu o. J Chem Inf Model. 2021 May 24;61(5):2444-2453. doi: 10.1021/acs.jcim.1c00338. Epub 2021 Apr 30. J Chem Inf Model. 2021. PMID: 33930270

10

In silico and in vitro assessment of androgen receptor antagonists.

Serçinoğlu O, Bereketoglu C, Olsson PE, Pradhan A. Serçinoğlu O, et al. Comput Biol Chem. 2021 Jun;92:107490. doi: 10.1016/j.compbiolchem.2021.107490. Epub 2021 Apr 23. Comput Biol Chem. 2021. PMID: 33932781 Free article.

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