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Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.
Deutsch EW, Sun Z, Campbell DS, Binz PA, Farrah T, Shteynberg D, Mendoza L, Omenn GS, Moritz RL. Deutsch EW, et al. Among authors: campbell ds. J Proteome Res. 2016 Nov 4;15(11):4091-4100. doi: 10.1021/acs.jproteome.6b00445. Epub 2016 Sep 12. J Proteome Res. 2016. PMID: 27577934 Free PMC article.
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).
Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD. Deutsch EW, et al. OMICS. 2006 Summer;10(2):205-8. doi: 10.1089/omi.2006.10.205. OMICS. 2006. PMID: 16901227 Review.
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).
Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen JH, Daian F, Dauga D, Davidson DR, Gimenez G, Goo YA, Grimmond S, Henrich T, Herrmann BG, Johnson MH, Korb M, Mills JC, Oudes AJ, Parkinson HE, Pascal LE, Pollet N, Quackenbush J, Ramialison M, Ringwald M, Salgado D, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Warford A, Wilkinson DG, Zhou Y, Zon LI, Liu AY, True LD. Deutsch EW, et al. Nat Biotechnol. 2008 Mar;26(3):305-12. doi: 10.1038/nbt1391. Nat Biotechnol. 2008. PMID: 18327244 Free PMC article.
A database of mass spectrometric assays for the yeast proteome.
Picotti P, Lam H, Campbell D, Deutsch EW, Mirzaei H, Ranish J, Domon B, Aebersold R. Picotti P, et al. Nat Methods. 2008 Nov;5(11):913-4. doi: 10.1038/nmeth1108-913. Nat Methods. 2008. PMID: 18974732 Free PMC article. No abstract available.
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.
Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R. Farrah T, et al. Among authors: campbell ds. Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1. Mol Cell Proteomics. 2011. PMID: 21632744 Free PMC article.
TraML--a standard format for exchange of selected reaction monitoring transition lists.
Deutsch EW, Chambers M, Neumann S, Levander F, Binz PA, Shofstahl J, Campbell DS, Mendoza L, Ovelleiro D, Helsens K, Martens L, Aebersold R, Moritz RL, Brusniak MY. Deutsch EW, et al. Among authors: campbell ds. Mol Cell Proteomics. 2012 Apr;11(4):R111.015040. doi: 10.1074/mcp.R111.015040. Epub 2011 Dec 12. Mol Cell Proteomics. 2012. PMID: 22159873 Free PMC article.
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