Kojima K - Search Results

1

STR-realigner: a realignment method for short tandem repeat regions.

Kojima K, Kawai Y, Misawa K, Mimori T, Nagasaki M. Kojima K, et al. BMC Genomics. 2016 Dec 3;17(1):991. doi: 10.1186/s12864-016-3294-x. BMC Genomics. 2016. PMID: 27912743 Free PMC article.

2

An efficient grid layout algorithm for biological networks utilizing various biological attributes.

Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2007 Mar 6;8:76. doi: 10.1186/1471-2105-8-76. BMC Bioinformatics. 2007. PMID: 17338825 Free PMC article.

3

Fast grid layout algorithm for biological networks with sweep calculation.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. Bioinformatics. 2008 Jun 15;24(12):1433-41. doi: 10.1093/bioinformatics/btn196. Epub 2008 Apr 18. Bioinformatics. 2008. PMID: 18424458

4

BFL: a node and edge betweenness based fast layout algorithm for large scale networks.

Hashimoto TB, Nagasaki M, Kojima K, Miyano S. Hashimoto TB, et al. Among authors: kojima k. BMC Bioinformatics. 2009 Jan 15;10:19. doi: 10.1186/1471-2105-10-19. BMC Bioinformatics. 2009. PMID: 19146673 Free PMC article.

5

A state space representation of VAR models with sparse learning for dynamic gene networks.

Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S. Kojima K, et al. Genome Inform. 2010 Jan;22:56-68. Genome Inform. 2010. PMID: 20238419

6

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2010 Jun 18;11:335. doi: 10.1186/1471-2105-11-335. BMC Bioinformatics. 2010. PMID: 20565884 Free PMC article.

7

Cell illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. Among authors: kojima k. Stud Health Technol Inform. 2011;162:160-81. Stud Health Technol Inform. 2011. PMID: 21685571

8

Gene regulatory network clustering for graph layout based on microarray gene expression data.

Kojima K, Imoto S, Nagasaki M, Miyano S. Kojima K, et al. Genome Inform. 2010;24:84-95. Genome Inform. 2010. PMID: 22081591 Free article.

9

Cell Illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. Among authors: kojima k. In Silico Biol. 2010;10(1):5-26. doi: 10.3233/ISB-2010-0415. In Silico Biol. 2010. PMID: 22430219

10

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Nariai N, Hirose O, Kojima K, Nagasaki M. Nariai N, et al. Among authors: kojima k. Bioinformatics. 2013 Sep 15;29(18):2292-9. doi: 10.1093/bioinformatics/btt381. Epub 2013 Jul 2. Bioinformatics. 2013. PMID: 23821651

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