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Evolution-informed modeling improves outcome prediction for cancers.
Liu L, Chang Y, Yang T, Noren DP, Long B, Kornblau S, Qutub A, Ye J. Liu L, et al. Among authors: long b. Evol Appl. 2016 Oct 21;10(1):68-76. doi: 10.1111/eva.12417. eCollection 2017 Jan. Evol Appl. 2016. PMID: 28035236 Free PMC article.
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.
Noren DP, Long BL, Norel R, Rrhissorrakrai K, Hess K, Hu CW, Bisberg AJ, Schultz A, Engquist E, Liu L, Lin X, Chen GM, Xie H, Hunter GA, Boutros PC, Stepanov O; DREAM 9 AML-OPC Consortium; Norman T, Friend SH, Stolovitzky G, Kornblau S, Qutub AA. Noren DP, et al. PLoS Comput Biol. 2016 Jun 28;12(6):e1004890. doi: 10.1371/journal.pcbi.1004890. eCollection 2016 Jun. PLoS Comput Biol. 2016. PMID: 27351836 Free PMC article.
Inferring causal molecular networks: empirical assessment through a community-based effort.
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium; Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S. Hill SM, et al. Among authors: long bl. Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22. Nat Methods. 2016. PMID: 26901648 Free PMC article.
cytoNet: Spatiotemporal network analysis of cell communities.
Mahadevan AS, Long BL, Hu CW, Ryan DT, Grandel NE, Britton GL, Bustos M, Gonzalez Porras MA, Stojkova K, Ligeralde A, Son H, Shannonhouse J, Robinson JT, Warmflash A, Brey EM, Kim YS, Qutub AA. Mahadevan AS, et al. PLoS Comput Biol. 2022 Jun 13;18(6):e1009846. doi: 10.1371/journal.pcbi.1009846. eCollection 2022 Jun. PLoS Comput Biol. 2022. PMID: 35696439 Free PMC article.
MAGMA: Microbial and Algal Growth Modeling Application.
Xu VA, Lee H, Long B, Yuan J, Tang YJ. Xu VA, et al. Among authors: long b. N Biotechnol. 2024 Nov 26;85:16-22. doi: 10.1016/j.nbt.2024.11.004. Online ahead of print. N Biotechnol. 2024. PMID: 39603522
1,988 results