Hansen KD - Search Results

1

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.

Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernández J, Collado-Torres L, Wang S, Phillips RA III, Karbhari N, Hansen KD, Langmead B, Leek JT. Nellore A, et al. Among authors: hansen kd. Genome Biol. 2016 Dec 30;17(1):266. doi: 10.1186/s13059-016-1118-6. Genome Biol. 2016. PMID: 28038678 Free PMC article.

2

Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Langmead B, Hansen KD, Leek JT. Langmead B, et al. Among authors: hansen kd. Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11. Genome Biol. 2010. PMID: 20701754 Free PMC article.

3

Sequencing technology does not eliminate biological variability.

Hansen KD, Wu Z, Irizarry RA, Leek JT. Hansen KD, et al. Nat Biotechnol. 2011 Jul 11;29(7):572-3. doi: 10.1038/nbt.1910. Nat Biotechnol. 2011. PMID: 21747377 Free PMC article.

4

Reversible switching between epigenetic states in honeybee behavioral subcastes.

Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, Amdam GV, Feinberg AP. Herb BR, et al. Among authors: hansen kd. Nat Neurosci. 2012 Oct;15(10):1371-3. doi: 10.1038/nn.3218. Epub 2012 Sep 16. Nat Neurosci. 2012. PMID: 22983211 Free PMC article.

5

Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization.

Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP. Hansen KD, et al. Genome Res. 2014 Feb;24(2):177-84. doi: 10.1101/gr.157743.113. Epub 2013 Sep 25. Genome Res. 2014. PMID: 24068705 Free PMC article.

6

Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT. Frazee AC, et al. Among authors: hansen kd. Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6. Biostatistics. 2014. PMID: 24398039 Free PMC article.

7

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. Aryee MJ, et al. Among authors: hansen kd. Bioinformatics. 2014 May 15;30(10):1363-9. doi: 10.1093/bioinformatics/btu049. Epub 2014 Jan 28. Bioinformatics. 2014. PMID: 24478339 Free PMC article.

8

shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R.

Fortin JP, Fertig E, Hansen K. Fortin JP, et al. F1000Res. 2014 Jul 30;3:175. doi: 10.12688/f1000research.4680.2. eCollection 2014. F1000Res. 2014. PMID: 25285208 Free PMC article.

9

Functional normalization of 450k methylation array data improves replication in large cancer studies.

Fortin JP, Labbe A, Lemire M, Zanke BW, Hudson TJ, Fertig EJ, Greenwood CM, Hansen KD. Fortin JP, et al. Among authors: hansen kd. Genome Biol. 2014 Dec 3;15(12):503. doi: 10.1186/s13059-014-0503-2. Genome Biol. 2014. PMID: 25599564 Free PMC article.

10

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data.

Fortin JP, Hansen KD. Fortin JP, et al. Among authors: hansen kd. Genome Biol. 2015 Aug 28;16(1):180. doi: 10.1186/s13059-015-0741-y. Genome Biol. 2015. PMID: 26316348 Free PMC article.

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