Marco-Sola S - Search Results

1

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.

Rodríguez-Martín B, Palumbo E, Marco-Sola S, Griebel T, Ribeca P, Alonso G, Rastrojo A, Aguado B, Guigó R, Djebali S. Rodríguez-Martín B, et al. BMC Genomics. 2017 Jan 3;18(1):7. doi: 10.1186/s12864-016-3404-9. BMC Genomics. 2017. PMID: 28049418 Free PMC article.

2

Optimal gap-affine alignment in O(s) space.

Marco-Sola S, Eizenga JM, Guarracino A, Paten B, Garrison E, Moreto M. Marco-Sola S, et al. Bioinformatics. 2023 Feb 3;39(2):btad074. doi: 10.1093/bioinformatics/btad074. Bioinformatics. 2023. PMID: 36749013 Free PMC article.

3

Fast computation and applications of genome mappability.

Derrien T, Estellé J, Marco Sola S, Knowles DG, Raineri E, Guigó R, Ribeca P. Derrien T, et al. PLoS One. 2012;7(1):e30377. doi: 10.1371/journal.pone.0030377. Epub 2012 Jan 19. PLoS One. 2012. PMID: 22276185 Free PMC article.

4

The GEM mapper: fast, accurate and versatile alignment by filtration.

Marco-Sola S, Sammeth M, Guigó R, Ribeca P. Marco-Sola S, et al. Nat Methods. 2012 Dec;9(12):1185-8. doi: 10.1038/nmeth.2221. Epub 2012 Oct 28. Nat Methods. 2012. PMID: 23103880

5

Efficient Alignment of Illumina-Like High-Throughput Sequencing Reads with the GEnomic Multi-tool (GEM) Mapper.

Marco-Sola S, Ribeca P. Marco-Sola S, et al. Curr Protoc Bioinformatics. 2015 Jun 19;50:11.13.1-11.13.20. doi: 10.1002/0471250953.bi1113s50. Curr Protoc Bioinformatics. 2015. PMID: 26094690

6

Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.

Chacón A, Marco-Sola S, Espinosa A, Ribeca P, Moure JC. Chacón A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Sep-Oct;12(5):1048-59. doi: 10.1109/TCBB.2014.2377716. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26451818

7

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.

Merkel A, Fernández-Callejo M, Casals E, Marco-Sola S, Schuyler R, Gut IG, Heath SC. Merkel A, et al. Bioinformatics. 2019 Mar 1;35(5):737-742. doi: 10.1093/bioinformatics/bty690. Bioinformatics. 2019. PMID: 30137223

8

From Wet-Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing.

Laurie S, Fernandez-Callejo M, Marco-Sola S, Trotta JR, Camps J, Chacón A, Espinosa A, Gut M, Gut I, Heath S, Beltran S. Laurie S, et al. Hum Mutat. 2016 Dec;37(12):1263-1271. doi: 10.1002/humu.23114. Epub 2016 Sep 26. Hum Mutat. 2016. PMID: 27604516 Free PMC article.

9

Fast gap-affine pairwise alignment using the wavefront algorithm.

Marco-Sola S, Moure JC, Moreto M, Espinosa A. Marco-Sola S, et al. Bioinformatics. 2021 May 1;37(4):456-463. doi: 10.1093/bioinformatics/btaa777. Bioinformatics. 2021. PMID: 32915952 Free PMC article.

10

AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication.

Song B, Marco-Sola S, Moreto M, Johnson L, Buckler ES, Stitzer MC. Song B, et al. Proc Natl Acad Sci U S A. 2022 Jan 4;119(1):e2113075119. doi: 10.1073/pnas.2113075119. Proc Natl Acad Sci U S A. 2022. PMID: 34934012 Free PMC article.

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