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Page 1
Performance comparison of four exome capture systems for deep sequencing.
Chilamakuri CS, Lorenz S, Madoui MA, Vodák D, Sun J, Hovig E, Myklebost O, Meza-Zepeda LA. Chilamakuri CS, et al. Among authors: vodak d. BMC Genomics. 2014 Jun 9;15(1):449. doi: 10.1186/1471-2164-15-449. BMC Genomics. 2014. PMID: 24912484 Free PMC article.
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.
Alioto TS, Buchhalter I, Derdak S, Hutter B, Eldridge MD, Hovig E, Heisler LE, Beck TA, Simpson JT, Tonon L, Sertier AS, Patch AM, Jäger N, Ginsbach P, Drews R, Paramasivam N, Kabbe R, Chotewutmontri S, Diessl N, Previti C, Schmidt S, Brors B, Feuerbach L, Heinold M, Gröbner S, Korshunov A, Tarpey PS, Butler AP, Hinton J, Jones D, Menzies A, Raine K, Shepherd R, Stebbings L, Teague JW, Ribeca P, Giner FC, Beltran S, Raineri E, Dabad M, Heath SC, Gut M, Denroche RE, Harding NJ, Yamaguchi TN, Fujimoto A, Nakagawa H, Quesada V, Valdés-Mas R, Nakken S, Vodák D, Bower L, Lynch AG, Anderson CL, Waddell N, Pearson JV, Grimmond SM, Peto M, Spellman P, He M, Kandoth C, Lee S, Zhang J, Létourneau L, Ma S, Seth S, Torrents D, Xi L, Wheeler DA, López-Otín C, Campo E, Campbell PJ, Boutros PC, Puente XS, Gerhard DS, Pfister SM, McPherson JD, Hudson TJ, Schlesner M, Lichter P, Eils R, Jones DT, Gut IG. Alioto TS, et al. Among authors: vodak d. Nat Commun. 2015 Dec 9;6:10001. doi: 10.1038/ncomms10001. Nat Commun. 2015. PMID: 26647970 Free PMC article.
Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations.
Lorenz S, Barøy T, Sun J, Nome T, Vodák D, Bryne JC, Håkelien AM, Fernandez-Cuesta L, Möhlendick B, Rieder H, Szuhai K, Zaikova O, Ahlquist TC, Thomassen GO, Skotheim RI, Lothe RA, Tarpey PS, Campbell P, Flanagan A, Myklebost O, Meza-Zepeda LA. Lorenz S, et al. Among authors: vodak d. Oncotarget. 2016 Feb 2;7(5):5273-88. doi: 10.18632/oncotarget.6567. Oncotarget. 2016. PMID: 26672768 Free PMC article.
TP53 Mutation Spectrum in Smokers and Never Smoking Lung Cancer Patients.
Halvorsen AR, Silwal-Pandit L, Meza-Zepeda LA, Vodak D, Vu P, Sagerup C, Hovig E, Myklebost O, Børresen-Dale AL, Brustugun OT, Helland Å. Halvorsen AR, et al. Among authors: vodak d. Front Genet. 2016 May 11;7:85. doi: 10.3389/fgene.2016.00085. eCollection 2016. Front Genet. 2016. PMID: 27242894 Free PMC article.
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival.
Helland Å, Brustugun OT, Nakken S, Halvorsen AR, Dønnem T, Bremnes R, Busund LT, Sun J, Lorenz S, Solberg SK, Jørgensen LH, Vodak D, Myklebost O, Hovig E, Meza-Zepeda LA. Helland Å, et al. Among authors: vodak d. Int J Cancer. 2017 Jul 1;141(1):184-190. doi: 10.1002/ijc.30726. Epub 2017 Apr 21. Int J Cancer. 2017. PMID: 28387924 Free PMC article.
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.
Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK. Simovski B, et al. Among authors: vodak d. Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032. Gigascience. 2017. PMID: 28459977 Free PMC article.
The rainfall plot: its motivation, characteristics and pitfalls.
Domanska D, Vodák D, Lund-Andersen C, Salvatore S, Hovig E, Sandve GK. Domanska D, et al. Among authors: vodak d. BMC Bioinformatics. 2017 May 18;18(1):264. doi: 10.1186/s12859-017-1679-8. BMC Bioinformatics. 2017. PMID: 28521741 Free PMC article.
55 results