Ozbek P - Search Results

1

Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles.

Serçinoğlu O, Ozbek P. Serçinoğlu O, et al. Among authors: ozbek p. J Biomol Struct Dyn. 2018 Feb;36(3):724-740. doi: 10.1080/07391102.2017.1295884. Epub 2017 Mar 1. J Biomol Struct Dyn. 2018. PMID: 28278760

2

Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study.

Ozbek P. Ozbek P. Comput Biol Chem. 2016 Jun;62:12-6. doi: 10.1016/j.compbiolchem.2016.02.019. Epub 2016 Mar 18. Comput Biol Chem. 2016. PMID: 27016630

3

A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis.

Serçinoğlu O, Özcan G, Kabaş ZK, Ozbek P. Serçinoğlu O, et al. Among authors: ozbek p. J Comput Aided Mol Des. 2016 Jul;30(7):569-81. doi: 10.1007/s10822-016-9934-z. Epub 2016 Aug 9. J Comput Aided Mol Des. 2016. PMID: 27506766

4

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations.

Serçinoglu O, Ozbek P. Serçinoglu O, et al. Among authors: ozbek p. Nucleic Acids Res. 2018 Jul 2;46(W1):W554-W562. doi: 10.1093/nar/gky381. Nucleic Acids Res. 2018. PMID: 29800260 Free PMC article.

5

How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study.

Bingöl EN, Serçinoğlu O, Ozbek P. Bingöl EN, et al. Among authors: ozbek p. J Biomol Struct Dyn. 2019 Aug;37(13):3456-3466. doi: 10.1080/07391102.2018.1517611. Epub 2018 Nov 17. J Biomol Struct Dyn. 2019. PMID: 30175666

6

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism.

Aydınkal RM, Serçinoğlu O, Ozbek P. Aydınkal RM, et al. Among authors: ozbek p. Nucleic Acids Res. 2019 Jul 2;47(W1):W471-W476. doi: 10.1093/nar/gkz390. Nucleic Acids Res. 2019. PMID: 31114881 Free PMC article.

7

Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles.

Bunsuz A, Serçinoğlu O, Ozbek P. Bunsuz A, et al. Among authors: ozbek p. Comput Biol Chem. 2020 Feb;84:107195. doi: 10.1016/j.compbiolchem.2019.107195. Epub 2019 Dec 19. Comput Biol Chem. 2020. PMID: 31877499

8

Sequence-structure-function relationships in class I MHC: A local frustration perspective.

Serçinoğlu O, Ozbek P. Serçinoğlu O, et al. Among authors: ozbek p. PLoS One. 2020 May 18;15(5):e0232849. doi: 10.1371/journal.pone.0232849. eCollection 2020. PLoS One. 2020. PMID: 32421728 Free PMC article.

9

Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy.

Yazar M, Ozbek P. Yazar M, et al. Among authors: ozbek p. J Comput Aided Mol Des. 2020 Sep;34(9):965-974. doi: 10.1007/s10822-020-00316-y. Epub 2020 May 19. J Comput Aided Mol Des. 2020. PMID: 32430574

10

Identification of novel inhibitors of the ABC transporter BmrA.

Serçinoğlu O, Senturk D, Altinisik Kaya FE, Avci FG, Frlan R, Tomašič T, Ozbek P, Orelle C, Jault JM, Sariyar Akbulut B. Serçinoğlu O, et al. Among authors: ozbek p. Bioorg Chem. 2020 Dec;105:104452. doi: 10.1016/j.bioorg.2020.104452. Epub 2020 Nov 4. Bioorg Chem. 2020. PMID: 33212311

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