Chen CC - Search Results

1

SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.

Xiao S, Lu J, Sridhar B, Cao X, Yu P, Zhao T, Chen CC, McDee D, Sloofman L, Wang Y, Rivas-Astroza M, Telugu BPVL, Levasseur D, Zhang K, Liang H, Zhao JC, Tanaka TS, Stormo G, Zhong S. Xiao S, et al. Among authors: chen cc. Cell Rep. 2017 Mar 28;18(13):3117-3128. doi: 10.1016/j.celrep.2017.02.070. Cell Rep. 2017. PMID: 28355564 Free PMC article.

2

Comparative epigenomic annotation of regulatory DNA.

Xiao S, Xie D, Cao X, Yu P, Xing X, Chen CC, Musselman M, Xie M, West FD, Lewin HA, Wang T, Zhong S. Xiao S, et al. Among authors: chen cc. Cell. 2012 Jun 8;149(6):1381-92. doi: 10.1016/j.cell.2012.04.029. Cell. 2012. PMID: 22682255 Free PMC article.

3

Inferring gene regulatory networks by thermodynamic modeling.

Chen CC, Zhong S. Chen CC, et al. BMC Genomics. 2008 Sep 16;9 Suppl 2(Suppl 2):S19. doi: 10.1186/1471-2164-9-S2-S19. BMC Genomics. 2008. PMID: 18831784 Free PMC article.

4

Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.

Chen CC, Xiao S, Xie D, Cao X, Song CX, Wang T, He C, Zhong S. Chen CC, et al. PLoS Comput Biol. 2013;9(12):e1003367. doi: 10.1371/journal.pcbi.1003367. Epub 2013 Dec 5. PLoS Comput Biol. 2013. PMID: 24339764 Free PMC article.

5

Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells.

Chen CC, Zhu XG, Zhong S. Chen CC, et al. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S18. doi: 10.1186/1471-2164-9-S1-S18. BMC Genomics. 2008. PMID: 18366607 Free PMC article.

6

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species.

Xie D, Chen CC, Ptaszek LM, Xiao S, Cao X, Fang F, Ng HH, Lewin HA, Cowan C, Zhong S. Xie D, et al. Among authors: chen cc. Genome Res. 2010 Jun;20(6):804-15. doi: 10.1101/gr.100594.109. Epub 2010 Mar 10. Genome Res. 2010. PMID: 20219939 Free PMC article.

7

Towards an evolutionary model of transcription networks.

Xie D, Chen CC, He X, Cao X, Zhong S. Xie D, et al. Among authors: chen cc. PLoS Comput Biol. 2011 Jun;7(6):e1002064. doi: 10.1371/journal.pcbi.1002064. Epub 2011 Jun 9. PLoS Comput Biol. 2011. PMID: 21695281 Free PMC article.

8

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.

He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S. He X, et al. Among authors: chen cc. PLoS One. 2009 Dec 1;4(12):e8155. doi: 10.1371/journal.pone.0008155. PLoS One. 2009. PMID: 19956545 Free PMC article.

9

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression.

Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. Ament SA, et al. Among authors: chen cc. PLoS Genet. 2012;8(3):e1002596. doi: 10.1371/journal.pgen.1002596. Epub 2012 Mar 29. PLoS Genet. 2012. PMID: 22479195 Free PMC article.

10

Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.

Cingolani P, Cao X, Khetani RS, Chen CC, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM. Cingolani P, et al. Among authors: chen cc. BMC Genomics. 2013 Sep 30;14:666. doi: 10.1186/1471-2164-14-666. BMC Genomics. 2013. PMID: 24079845 Free PMC article.

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