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GenomeScope: fast reference-free genome profiling from short reads.
Vurture GW, Sedlazeck FJ, Nattestad M, Underwood CJ, Fang H, Gurtowski J, Schatz MC. Vurture GW, et al. Among authors: underwood cj. Bioinformatics. 2017 Jul 15;33(14):2202-2204. doi: 10.1093/bioinformatics/btx153. Bioinformatics. 2017. PMID: 28369201 Free PMC article.
Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes.
Choi K, Reinhard C, Serra H, Ziolkowski PA, Underwood CJ, Zhao X, Hardcastle TJ, Yelina NE, Griffin C, Jackson M, Mézard C, McVean G, Copenhaver GP, Henderson IR. Choi K, et al. Among authors: underwood cj. PLoS Genet. 2016 Jul 14;12(7):e1006179. doi: 10.1371/journal.pgen.1006179. eCollection 2016 Jul. PLoS Genet. 2016. PMID: 27415776 Free PMC article.
Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.
Choi K, Zhao X, Tock AJ, Lambing C, Underwood CJ, Hardcastle TJ, Serra H, Kim J, Cho HS, Kim J, Ziolkowski PA, Yelina NE, Hwang I, Martienssen RA, Henderson IR. Choi K, et al. Among authors: underwood cj. Genome Res. 2018 Apr;28(4):532-546. doi: 10.1101/gr.225599.117. Epub 2018 Mar 12. Genome Res. 2018. PMID: 29530928 Free PMC article.
Natural variation identifies SNI1, the SMC5/6 component, as a modifier of meiotic crossover in Arabidopsis.
Zhu L, Fernández-Jiménez N, Szymanska-Lejman M, Pelé A, Underwood CJ, Serra H, Lambing C, Dluzewska J, Bieluszewski T, Pradillo M, Henderson IR, Ziolkowski PA. Zhu L, et al. Among authors: underwood cj. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2021970118. doi: 10.1073/pnas.2021970118. Proc Natl Acad Sci U S A. 2021. PMID: 34385313 Free PMC article.
Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis.
Serra H, Lambing C, Griffin CH, Topp SD, Nageswaran DC, Underwood CJ, Ziolkowski PA, Séguéla-Arnaud M, Fernandes JB, Mercier R, Henderson IR. Serra H, et al. Among authors: underwood cj. Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2437-2442. doi: 10.1073/pnas.1713071115. Epub 2018 Feb 20. Proc Natl Acad Sci U S A. 2018. PMID: 29463699 Free PMC article.
51 results