Bayden AS - Search Results

1

The Roles of Water in the Protein Matrix: A Largely Untapped Resource for Drug Discovery.

Spyrakis F, Ahmed MH, Bayden AS, Cozzini P, Mozzarelli A, Kellogg GE. Spyrakis F, et al. Among authors: bayden as. J Med Chem. 2017 Aug 24;60(16):6781-6827. doi: 10.1021/acs.jmedchem.7b00057. Epub 2017 May 5. J Med Chem. 2017. PMID: 28475332 Free article. Review.

2

Web application for studying the free energy of binding and protonation states of protein-ligand complexes based on HINT.

Bayden AS, Fornabaio M, Scarsdale JN, Kellogg GE. Bayden AS, et al. J Comput Aided Mol Des. 2009 Sep;23(9):621-32. doi: 10.1007/s10822-009-9270-7. Epub 2009 Jun 25. J Comput Aided Mol Des. 2009. PMID: 19554265 Free PMC article.

3

Design of O-acetylserine sulfhydrylase inhibitors by mimicking nature.

Salsi E, Bayden AS, Spyrakis F, Amadasi A, Campanini B, Bettati S, Dodatko T, Cozzini P, Kellogg GE, Cook PF, Roderick SL, Mozzarelli A. Salsi E, et al. Among authors: bayden as. J Med Chem. 2010 Jan 14;53(1):345-56. doi: 10.1021/jm901325e. J Med Chem. 2010. PMID: 19928859 Free PMC article.

4

Factors influencing protein tyrosine nitration--structure-based predictive models.

Bayden AS, Yakovlev VA, Graves PR, Mikkelsen RB, Kellogg GE. Bayden AS, et al. Free Radic Biol Med. 2011 Mar 15;50(6):749-62. doi: 10.1016/j.freeradbiomed.2010.12.016. Epub 2010 Dec 21. Free Radic Biol Med. 2011. PMID: 21172423 Free PMC article.

5

Fine tuning of the active site modulates specificity in the interaction of O-acetylserine sulfhydrylase isozymes with serine acetyltransferase.

Spyrakis F, Felici P, Bayden AS, Salsi E, Miggiano R, Kellogg GE, Cozzini P, Cook PF, Mozzarelli A, Campanini B. Spyrakis F, et al. Among authors: bayden as. Biochim Biophys Acta. 2013 Jan;1834(1):169-81. doi: 10.1016/j.bbapap.2012.09.009. Epub 2012 Sep 19. Biochim Biophys Acta. 2013. PMID: 23000429

6

Nitration of the tumor suppressor protein p53 at tyrosine 327 promotes p53 oligomerization and activation.

Yakovlev VA, Bayden AS, Graves PR, Kellogg GE, Mikkelsen RB. Yakovlev VA, et al. Among authors: bayden as. Biochemistry. 2010 Jun 29;49(25):5331-9. doi: 10.1021/bi100564w. Biochemistry. 2010. PMID: 20499882 Free PMC article.

7

Rational, computer-enabled peptide drug design: principles, methods, applications and future directions.

Diller DJ, Swanson J, Bayden AS, Jarosinski M, Audie J. Diller DJ, et al. Among authors: bayden as. Future Med Chem. 2015;7(16):2173-93. doi: 10.4155/fmc.15.142. Epub 2015 Oct 29. Future Med Chem. 2015. PMID: 26510691 Review.

8

Evaluating Free Energies of Binding and Conservation of Crystallographic Waters Using SZMAP.

Bayden AS, Moustakas DT, Joseph-McCarthy D, Lamb ML. Bayden AS, et al. J Chem Inf Model. 2015 Aug 24;55(8):1552-65. doi: 10.1021/ci500746d. Epub 2015 Aug 3. J Chem Inf Model. 2015. PMID: 26176600

9

A combined cheminformatic and bioinformatic approach to address the proteolytic stability challenge in peptide-based drug discovery.

Bayden AS, Gomez EF, Audie J, Chakravorty DK, Diller DJ. Bayden AS, et al. Biopolymers. 2015 Nov;104(6):775-89. doi: 10.1002/bip.22711. Biopolymers. 2015. PMID: 26270398

10

PeptideNavigator: An interactive tool for exploring large and complex data sets generated during peptide-based drug design projects.

Diller KI, Bayden AS, Audie J, Diller DJ. Diller KI, et al. Among authors: bayden as. Comput Biol Med. 2018 Jan 1;92:176-187. doi: 10.1016/j.compbiomed.2017.11.016. Epub 2017 Nov 24. Comput Biol Med. 2018. PMID: 29207334

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