Yang X - Search Results

1

High-throughput validation of ceRNA regulatory networks.

Chiu HS, Martínez MR, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: yang x. BMC Genomics. 2017 May 30;18(1):418. doi: 10.1186/s12864-017-3790-7. BMC Genomics. 2017. PMID: 28558729 Free PMC article.

2

An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma.

Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. Sumazin P, et al. Among authors: yang x. Cell. 2011 Oct 14;147(2):370-81. doi: 10.1016/j.cell.2011.09.041. Cell. 2011. PMID: 22000015 Free PMC article.

3

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.

Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, Califano A, Sumazin P. Chiu HS, et al. Among authors: yang x. Genome Res. 2015 Feb;25(2):257-67. doi: 10.1101/gr.178194.114. Epub 2014 Nov 5. Genome Res. 2015. PMID: 25378249 Free PMC article.

4

The number of titrated microRNA species dictates ceRNA regulation.

Chiu HS, Martínez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: yang x. Nucleic Acids Res. 2018 May 18;46(9):4354-4369. doi: 10.1093/nar/gky286. Nucleic Acids Res. 2018. PMID: 29684207 Free PMC article.

5

Genome-wide assessment of differential translations with ribosome profiling data.

Xiao Z, Zou Q, Liu Y, Yang X. Xiao Z, et al. Among authors: yang x. Nat Commun. 2016 Apr 4;7:11194. doi: 10.1038/ncomms11194. Nat Commun. 2016. PMID: 27041671 Free PMC article.

6

Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli.

Zhang Y, Xiao Z, Zou Q, Fang J, Wang Q, Yang X, Gao N. Zhang Y, et al. Among authors: yang x. Genomics Proteomics Bioinformatics. 2017 Oct;15(5):324-330. doi: 10.1016/j.gpb.2017.04.005. Epub 2017 Oct 12. Genomics Proteomics Bioinformatics. 2017. PMID: 29031842 Free PMC article.

7

Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L-AGRN Transcriptional Regulation Circuit.

Li X, Wang X, Song W, Xu H, Huang R, Wang Y, Zhao W, Xiao Z, Yang X. Li X, et al. Among authors: yang x. Cancer Res. 2018 Aug 1;78(15):4138-4149. doi: 10.1158/0008-5472.CAN-18-0688. Epub 2018 Jun 5. Cancer Res. 2018. PMID: 29871935

8

Function of HNRNPC in breast cancer cells by controlling the dsRNA-induced interferon response.

Wu Y, Zhao W, Liu Y, Tan X, Li X, Zou Q, Xiao Z, Xu H, Wang Y, Yang X. Wu Y, et al. Among authors: yang x. EMBO J. 2018 Dec 3;37(23):e99017. doi: 10.15252/embj.201899017. Epub 2018 Aug 29. EMBO J. 2018. PMID: 30158112 Free PMC article.

9

Dependency of the Cancer-Specific Transcriptional Regulation Circuitry on the Promoter DNA Methylome.

Liu Y, Liu Y, Huang R, Song W, Wang J, Xiao Z, Dong S, Yang Y, Yang X. Liu Y, et al. Among authors: yang x, yang y. Cell Rep. 2019 Mar 19;26(12):3461-3474.e5. doi: 10.1016/j.celrep.2019.02.084. Cell Rep. 2019. PMID: 30893615 Free article.

10

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data.

Li F, Xing X, Xiao Z, Xu G, Yang X. Li F, et al. Among authors: yang x. BMC Bioinformatics. 2020 Aug 1;21(1):340. doi: 10.1186/s12859-020-03670-8. BMC Bioinformatics. 2020. PMID: 32738892 Free PMC article.

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