Nabavi S - Search Results

1

An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.

Zare F, Dow M, Monteleone N, Hosny A, Nabavi S. Zare F, et al. Among authors: nabavi s. BMC Bioinformatics. 2017 May 31;18(1):286. doi: 10.1186/s12859-017-1705-x. BMC Bioinformatics. 2017. PMID: 28569140 Free PMC article.

2

Identifying candidate drivers of drug response in heterogeneous cancer by mining high throughput genomics data.

Nabavi S. Nabavi S. BMC Genomics. 2016 Aug 15;17(1):638. doi: 10.1186/s12864-016-2942-5. BMC Genomics. 2016. PMID: 27526849 Free PMC article.

3

Feasibility of analyzing DNA copy number variation in breast cancer tumor specimens from 1950 to 2010: how old is too old?

Krieger N, Nabavi S, Waterman PD, Achacoso NS, Acton L, Schnitt SJ, Habel LA. Krieger N, et al. Among authors: nabavi s. Cancer Causes Control. 2018 Mar;29(3):305-314. doi: 10.1007/s10552-018-1006-3. Epub 2018 Feb 9. Cancer Causes Control. 2018. PMID: 29427260 Free PMC article.

4

SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data.

Wang T, Nabavi S. Wang T, et al. Among authors: nabavi s. Methods. 2018 Aug 1;145:25-32. doi: 10.1016/j.ymeth.2018.04.017. Epub 2018 Apr 24. Methods. 2018. PMID: 29702224

5

Preprocessing Sequence Coverage Data for More Precise Detection of Copy Number Variations.

Zare F, Ansari S, Najarian K, Nabavi S. Zare F, et al. Among authors: nabavi s. IEEE/ACM Trans Comput Biol Bioinform. 2020 May-Jun;17(3):868-876. doi: 10.1109/TCBB.2018.2869738. Epub 2018 Sep 12. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 30222580 Free PMC article.

6

Noise cancellation using total variation for copy number variation detection.

Zare F, Hosny A, Nabavi S. Zare F, et al. Among authors: nabavi s. BMC Bioinformatics. 2018 Oct 22;19(Suppl 11):361. doi: 10.1186/s12859-018-2332-x. BMC Bioinformatics. 2018. PMID: 30343665 Free PMC article.

7

Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data.

Wang T, Li B, Nelson CE, Nabavi S. Wang T, et al. Among authors: nabavi s. BMC Bioinformatics. 2019 Jan 18;20(1):40. doi: 10.1186/s12859-019-2599-6. BMC Bioinformatics. 2019. PMID: 30658573 Free PMC article.

8

Deep convolutional neural networks for mammography: advances, challenges and applications.

Abdelhafiz D, Yang C, Ammar R, Nabavi S. Abdelhafiz D, et al. Among authors: nabavi s. BMC Bioinformatics. 2019 Jun 6;20(Suppl 11):281. doi: 10.1186/s12859-019-2823-4. BMC Bioinformatics. 2019. PMID: 31167642 Free PMC article.

9

An immune-centric exploration of BRCA1 and BRCA2 germline mutation related breast and ovarian cancers.

Przybytkowski E, Davis T, Hosny A, Eismann J, Matulonis UA, Wulf GM, Nabavi S. Przybytkowski E, et al. Among authors: nabavi s. BMC Cancer. 2020 Mar 12;20(1):197. doi: 10.1186/s12885-020-6605-1. BMC Cancer. 2020. PMID: 32164626 Free PMC article.

10

Copy Number Variation Detection Using Total Variation.

Zare F, Nabavi S. Zare F, et al. Among authors: nabavi s. ACM BCB. 2019 Sep;2019:423-428. doi: 10.1145/3307339.3342181. ACM BCB. 2019. PMID: 32515750 Free PMC article.

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