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Genome-wide characterization of mammalian promoters with distal enhancer functions.
Dao LTM, Galindo-Albarrán AO, Castro-Mondragon JA, Andrieu-Soler C, Medina-Rivera A, Souaid C, Charbonnier G, Griffon A, Vanhille L, Stephen T, Alomairi J, Martin D, Torres M, Fernandez N, Soler E, van Helden J, Puthier D, Spicuglia S. Dao LTM, et al. Nat Genet. 2017 Jul;49(7):1073-1081. doi: 10.1038/ng.3884. Epub 2017 Jun 5. Nat Genet. 2017. PMID: 28581502
RSAT 2015: Regulatory Sequence Analysis Tools.
Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J. Medina-Rivera A, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22. Nucleic Acids Res. 2015. PMID: 25904632 Free PMC article.
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
Gama-Castro S, Salgado H, Santos-Zavaleta A, Ledezma-Tejeida D, Muñiz-Rascado L, García-Sotelo JS, Alquicira-Hernández K, Martínez-Flores I, Pannier L, Castro-Mondragón JA, Medina-Rivera A, Solano-Lira H, Bonavides-Martínez C, Pérez-Rueda E, Alquicira-Hernández S, Porrón-Sotelo L, López-Fuentes A, Hernández-Koutoucheva A, Del Moral-Chávez V, Rinaldi F, Collado-Vides J. Gama-Castro S, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D133-43. doi: 10.1093/nar/gkv1156. Epub 2015 Nov 2. Nucleic Acids Res. 2016. PMID: 26527724 Free PMC article.
Widespread Enhancer Activity from Core Promoters.
Medina-Rivera A, Santiago-Algarra D, Puthier D, Spicuglia S. Medina-Rivera A, et al. Trends Biochem Sci. 2018 Jun;43(6):452-468. doi: 10.1016/j.tibs.2018.03.004. Epub 2018 Apr 16. Trends Biochem Sci. 2018. PMID: 29673772 Free article. Review.
RSAT 2018: regulatory sequence analysis tools 20th anniversary.
Nguyen NTT, Contreras-Moreira B, Castro-Mondragon JA, Santana-Garcia W, Ossio R, Robles-Espinoza CD, Bahin M, Collombet S, Vincens P, Thieffry D, van Helden J, Medina-Rivera A, Thomas-Chollier M. Nguyen NTT, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W209-W214. doi: 10.1093/nar/gky317. Nucleic Acids Res. 2018. PMID: 29722874 Free PMC article.
RSAT variation-tools: An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding.
Santana-Garcia W, Rocha-Acevedo M, Ramirez-Navarro L, Mbouamboua Y, Thieffry D, Thomas-Chollier M, Contreras-Moreira B, van Helden J, Medina-Rivera A. Santana-Garcia W, et al. Comput Struct Biotechnol J. 2019 Nov 7;17:1415-1428. doi: 10.1016/j.csbj.2019.09.009. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31871587 Free PMC article.
IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8+ T Cells.
Gutiérrez-Reyna DY, Cedillo-Baños A, Kempis-Calanis LA, Ramírez-Pliego O, Bargier L, Puthier D, Abad-Flores JD, Thomas-Chollier M, Thieffry D, Medina-Rivera A, Spicuglia S, Santana MA. Gutiérrez-Reyna DY, et al. Front Immunol. 2020 Jun 5;11:1089. doi: 10.3389/fimmu.2020.01089. eCollection 2020. Front Immunol. 2020. PMID: 32582178 Free PMC article.
RSAT 2022: regulatory sequence analysis tools.
Santana-Garcia W, Castro-Mondragon JA, Padilla-Gálvez M, Nguyen NTT, Elizondo-Salas A, Ksouri N, Gerbes F, Thieffry D, Vincens P, Contreras-Moreira B, van Helden J, Thomas-Chollier M, Medina-Rivera A. Santana-Garcia W, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W670-W676. doi: 10.1093/nar/gkac312. Nucleic Acids Res. 2022. PMID: 35544234 Free PMC article.
40 results