Sze SH - Search Results

1

A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms.

Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM. Sze SH, et al. BMC Genomics. 2017 May 24;18(Suppl 4):387. doi: 10.1186/s12864-017-3735-1. BMC Genomics. 2017. PMID: 28589866 Free PMC article.

2

Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics.

Wang J, Adelson DL, Yilmaz A, Sze SH, Jin Y, Zhu JJ. Wang J, et al. Among authors: sze sh. BMC Genomics. 2005 Mar 24;6:45. doi: 10.1186/1471-2164-6-45. BMC Genomics. 2005. PMID: 15790398 Free PMC article.

3

A 24-48 h fed Amblyomma americanum tick saliva immuno-proteome.

Radulović ŽM, Kim TK, Porter LM, Sze SH, Lewis L, Mulenga A. Radulović ŽM, et al. Among authors: sze sh. BMC Genomics. 2014 Jun 24;15:518. doi: 10.1186/1471-2164-15-518. BMC Genomics. 2014. PMID: 24962723 Free PMC article.

4

A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.

Sze SH, Tarone AM. Sze SH, et al. BMC Genomics. 2014;15 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-15-S5-S6. Epub 2014 Jul 14. BMC Genomics. 2014. PMID: 25082000 Free PMC article.

5

Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.

Fu S, Tarone AM, Sze SH. Fu S, et al. Among authors: sze sh. BMC Genomics. 2015;16 Suppl 11(Suppl 11):S5. doi: 10.1186/1471-2164-16-S11-S5. Epub 2015 Nov 10. BMC Genomics. 2015. PMID: 26576690 Free PMC article.

6

Genome Sequence of a Proteus mirabilis Strain Isolated from the Salivary Glands of Larval Lucilia sericata.

Yuan Y, Zhang Y, Fu S, Crippen TL, Visi DK, Benbow ME, Allen MS, Tomberlin JK, Sze SH, Tarone AM. Yuan Y, et al. Among authors: sze sh. Genome Announc. 2016 Jul 28;4(4):e00672-16. doi: 10.1128/genomeA.00672-16. Genome Announc. 2016. PMID: 27469950 Free PMC article.

7

Genome Sequence of a Providencia stuartii Strain Isolated from Luciliasericata Salivary Glands.

Yuan Y, Zhang Y, Fu S, Crippen TL, Visi DK, Benbow ME, Allen MS, Tomberlin JK, Sze SH, Tarone AM. Yuan Y, et al. Among authors: sze sh. Genome Announc. 2017 Apr 27;5(17):e00250-17. doi: 10.1128/genomeA.00250-17. Genome Announc. 2017. PMID: 28450516 Free PMC article.

8

A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.

Sze SH, Parrott JJ, Tarone AM. Sze SH, et al. BMC Genomics. 2017 Dec 6;18(Suppl 10):895. doi: 10.1186/s12864-017-4270-9. BMC Genomics. 2017. PMID: 29244008 Free PMC article.

9

Machine learning performance in a microbial molecular autopsy context: A cross-sectional postmortem human population study.

Zhang Y, Pechal JL, Schmidt CJ, Jordan HR, Wang WW, Benbow ME, Sze SH, Tarone AM. Zhang Y, et al. Among authors: sze sh. PLoS One. 2019 Apr 15;14(4):e0213829. doi: 10.1371/journal.pone.0213829. eCollection 2019. PLoS One. 2019. PMID: 30986212 Free PMC article.

10

Fu S, Chang PL, Friesen ML, Teakle NL, Tarone AM, Sze SH. Fu S, et al. Among authors: sze sh. BMC Genomics. 2019 Jun 6;20(Suppl 5):425. doi: 10.1186/s12864-019-5702-5. BMC Genomics. 2019. PMID: 31167652 Free PMC article.

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