Rätsch G - Search Results

1

Tumor Necrosis Factor dynamically regulates the mRNA stabilome in rheumatoid arthritis fibroblast-like synoviocytes.

Loupasakis K, Kuo D, Sokhi UK, Sohn C, Syracuse B, Giannopoulou EG, Park SH, Kang H, Rätsch G, Ivashkiv LB, Kalliolias GD. Loupasakis K, et al. Among authors: ratsch g. PLoS One. 2017 Jul 14;12(7):e0179762. doi: 10.1371/journal.pone.0179762. eCollection 2017. PLoS One. 2017. PMID: 28708839 Free PMC article.

2

Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation.

Su X, Yu Y, Zhong Y, Giannopoulou EG, Hu X, Liu H, Cross JR, Rätsch G, Rice CM, Ivashkiv LB. Su X, et al. Among authors: ratsch g. Nat Immunol. 2015 Aug;16(8):838-849. doi: 10.1038/ni.3205. Epub 2015 Jun 29. Nat Immunol. 2015. PMID: 26147685 Free PMC article.

3

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints.

Zhong Y, Karaletsos T, Drewe P, Sreedharan VT, Kuo D, Singh K, Wendel HG, Rätsch G. Zhong Y, et al. Among authors: ratsch g. Bioinformatics. 2017 Jan 1;33(1):139-141. doi: 10.1093/bioinformatics/btw585. Epub 2016 Sep 14. Bioinformatics. 2017. PMID: 27634950 Free PMC article.

4

HBEGF⁺ macrophages in rheumatoid arthritis induce fibroblast invasiveness.

Kuo D, Ding J, Cohn IS, Zhang F, Wei K, Rao DA, Rozo C, Sokhi UK, Shanaj S, Oliver DJ, Echeverria AP, DiCarlo EF, Brenner MB, Bykerk VP, Goodman SM, Raychaudhuri S, Rätsch G, Ivashkiv LB, Donlin LT. Kuo D, et al. Among authors: ratsch g. Sci Transl Med. 2019 May 8;11(491):eaau8587. doi: 10.1126/scitranslmed.aau8587. Sci Transl Med. 2019. PMID: 31068444 Free PMC article.

5

A Rapid Translational Immune Response Program in CD8 Memory T Lymphocytes.

Salloum D, Singh K, Davidson NR, Cao L, Kuo D, Sanghvi VR, Jiang M, Lafoz MT, Viale A, Ratsch G, Wendel HG. Salloum D, et al. Among authors: ratsch g. J Immunol. 2022 Sep 15;209(6):1189-1199. doi: 10.4049/jimmunol.2100537. Epub 2022 Aug 24. J Immunol. 2022. PMID: 36002234 Free PMC article.

6

Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota.

Stein RR, Bucci V, Toussaint NC, Buffie CG, Rätsch G, Pamer EG, Sander C, Xavier JB. Stein RR, et al. Among authors: ratsch g. PLoS Comput Biol. 2013;9(12):e1003388. doi: 10.1371/journal.pcbi.1003388. Epub 2013 Dec 12. PLoS Comput Biol. 2013. PMID: 24348232 Free PMC article.

7

A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters.

Demircioğlu D, Cukuroglu E, Kindermans M, Nandi T, Calabrese C, Fonseca NA, Kahles A, Lehmann KV, Stegle O, Brazma A, Brooks AN, Rätsch G, Tan P, Göke J. Demircioğlu D, et al. Among authors: ratsch g. Cell. 2019 Sep 5;178(6):1465-1477.e17. doi: 10.1016/j.cell.2019.08.018. Cell. 2019. PMID: 31491388 Free article.

8

RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection.

Lehmann KV, Kahles A, Murr M, Rätsch G. Lehmann KV, et al. Among authors: ratsch g. J Comput Biol. 2022 Aug;29(8):857-866. doi: 10.1089/cmb.2021.0603. Epub 2022 Jul 1. J Comput Biol. 2022. PMID: 35776515

9

Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.

Lehmann KV, Kahles A, Kandoth C, Lee W, Schultz N, Stegle O, Rätsch G. Lehmann KV, et al. Among authors: ratsch g. Pac Symp Biocomput. 2015;20:44-55. Pac Symp Biocomput. 2015. PMID: 25592567 Free PMC article.

10

Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.

Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A. Hartmann L, et al. Among authors: ratsch g. Plant Cell. 2016 Nov;28(11):2715-2734. doi: 10.1105/tpc.16.00508. Epub 2016 Nov 1. Plant Cell. 2016. PMID: 27803310 Free PMC article.

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