Ramsey SA - Search Results

1

Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation.

Askovich PS, Ramsey SA, Diercks AH, Kennedy KA, Knijnenburg TA, Aderem A. Askovich PS, et al. Among authors: ramsey sa. PLoS One. 2017 Sep 18;12(9):e0184850. doi: 10.1371/journal.pone.0184850. eCollection 2017. PLoS One. 2017. PMID: 28922390 Free PMC article.

2

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.

Ramsey SA, Klemm SL, Zak DE, Kennedy KA, Thorsson V, Li B, Gilchrist M, Gold ES, Johnson CD, Litvak V, Navarro G, Roach JC, Rosenberger CM, Rust AG, Yudkovsky N, Aderem A, Shmulevich I. Ramsey SA, et al. PLoS Comput Biol. 2008 Mar 21;4(3):e1000021. doi: 10.1371/journal.pcbi.1000021. PLoS Comput Biol. 2008. PMID: 18369420 Free PMC article.

3

Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals.

Litvak V, Ramsey SA, Rust AG, Zak DE, Kennedy KA, Lampano AE, Nykter M, Shmulevich I, Aderem A. Litvak V, et al. Among authors: ramsey sa. Nat Immunol. 2009 Apr;10(4):437-43. doi: 10.1038/ni.1721. Epub 2009 Mar 8. Nat Immunol. 2009. PMID: 19270711 Free PMC article.

4

A systems biology approach to understanding atherosclerosis.

Ramsey SA, Gold ES, Aderem A. Ramsey SA, et al. EMBO Mol Med. 2010 Mar;2(3):79-89. doi: 10.1002/emmm.201000063. EMBO Mol Med. 2010. PMID: 20201031 Free PMC article. Review.

5

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites.

Ramsey SA, Knijnenburg TA, Kennedy KA, Zak DE, Gilchrist M, Gold ES, Johnson CD, Lampano AE, Litvak V, Navarro G, Stolyar T, Aderem A, Shmulevich I. Ramsey SA, et al. Bioinformatics. 2010 Sep 1;26(17):2071-5. doi: 10.1093/bioinformatics/btq405. Epub 2010 Jul 27. Bioinformatics. 2010. PMID: 20663846 Free PMC article.

6

ATF3, an adaptive-response gene, enhances TGF{beta} signaling and cancer-initiating cell features in breast cancer cells.

Yin X, Wolford CC, Chang YS, McConoughey SJ, Ramsey SA, Aderem A, Hai T. Yin X, et al. Among authors: ramsey sa. J Cell Sci. 2010 Oct 15;123(Pt 20):3558-65. doi: 10.1242/jcs.064915. J Cell Sci. 2010. PMID: 20930144 Free PMC article.

7

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation.

Gold ES, Ramsey SA, Sartain MJ, Selinummi J, Podolsky I, Rodriguez DJ, Moritz RL, Aderem A. Gold ES, et al. Among authors: ramsey sa. J Exp Med. 2012 Apr 9;209(4):807-17. doi: 10.1084/jem.20111202. Epub 2012 Apr 2. J Exp Med. 2012. PMID: 22473958 Free PMC article.

8

Urokinase plasminogen activator induces pro-fibrotic/m2 phenotype in murine cardiac macrophages.

Meznarich J, Malchodi L, Helterline D, Ramsey SA, Bertko K, Plummer T, Plawman A, Gold E, Stempien-Otero A. Meznarich J, et al. Among authors: ramsey sa. PLoS One. 2013;8(3):e57837. doi: 10.1371/journal.pone.0057837. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536772 Free PMC article.

9

Multiscale representation of genomic signals.

Knijnenburg TA, Ramsey SA, Berman BP, Kennedy KA, Smit AF, Wessels LF, Laird PW, Aderem A, Shmulevich I. Knijnenburg TA, et al. Among authors: ramsey sa. Nat Methods. 2014 Jun;11(6):689-94. doi: 10.1038/nmeth.2924. Epub 2014 Apr 13. Nat Methods. 2014. PMID: 24727652 Free PMC article.

10

Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway.

Ramsey SA, Vengrenyuk Y, Menon P, Podolsky I, Feig JE, Aderem A, Fisher EA, Gold ES. Ramsey SA, et al. PLoS Genet. 2014 Dec 4;10(12):e1004828. doi: 10.1371/journal.pgen.1004828. eCollection 2014 Dec. PLoS Genet. 2014. PMID: 25474352 Free PMC article.

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