Nakhleh L - Search Results

1

Bayesian inference of phylogenetic networks from bi-allelic genetic markers.

Zhu J, Wen D, Yu Y, Meudt HM, Nakhleh L. Zhu J, et al. Among authors: nakhleh l. PLoS Comput Biol. 2018 Jan 10;14(1):e1005932. doi: 10.1371/journal.pcbi.1005932. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29320496 Free PMC article.

2

Designing fast converging phylogenetic methods.

Nakhleh L, Roshan U, St John K, Sun J, Warnow T. Nakhleh L, et al. Bioinformatics. 2001;17 Suppl 1:S190-8. doi: 10.1093/bioinformatics/17.suppl_1.s190. Bioinformatics. 2001. PMID: 11473009

3

Reconstructing reticulate evolution in species-theory and practice.

Nakhleh L, Warnow T, Linder CR, St John K. Nakhleh L, et al. J Comput Biol. 2005 Jul-Aug;12(6):796-811. doi: 10.1089/cmb.2005.12.796. J Comput Biol. 2005. PMID: 16108717

4

Reconstructing phylogenetic networks using maximum parsimony.

Nakhleh L, Jin G, Zhao F, Mellor-Crummey J. Nakhleh L, et al. Proc IEEE Comput Syst Bioinform Conf. 2005:93-102. doi: 10.1109/csb.2005.47. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447967

5

Maximum likelihood of phylogenetic networks.

Jin G, Nakhleh L, Snir S, Tuller T. Jin G, et al. Among authors: nakhleh l. Bioinformatics. 2006 Nov 1;22(21):2604-11. doi: 10.1093/bioinformatics/btl452. Epub 2006 Aug 23. Bioinformatics. 2006. PMID: 16928736

6

Phylogenetic networks: modeling, reconstructibility, and accuracy.

Moret BM, Nakhleh L, Warnow T, Linder CR, Tholse A, Padolina A, Sun J, Timme R. Moret BM, et al. Among authors: nakhleh l. IEEE/ACM Trans Comput Biol Bioinform. 2004 Jan-Mar;1(1):13-23. doi: 10.1109/TCBB.2004.10. IEEE/ACM Trans Comput Biol Bioinform. 2004. PMID: 17048405

7

Inferring phylogenetic networks by the maximum parsimony criterion: a case study.

Jin G, Nakhleh L, Snir S, Tuller T. Jin G, et al. Among authors: nakhleh l. Mol Biol Evol. 2007 Jan;24(1):324-37. doi: 10.1093/molbev/msl163. Epub 2006 Oct 26. Mol Biol Evol. 2007. PMID: 17068107

8

Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions.

Than C, Ruths D, Innan H, Nakhleh L. Than C, et al. Among authors: nakhleh l. J Comput Biol. 2007 May;14(4):517-35. doi: 10.1089/cmb.2007.A010. J Comput Biol. 2007. PMID: 17572027 Free article.

9

The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks.

Ruths D, Muller M, Tseng JT, Nakhleh L, Ram PT. Ruths D, et al. Among authors: nakhleh l. PLoS Comput Biol. 2008 Feb 29;4(2):e1000005. doi: 10.1371/journal.pcbi.1000005. PLoS Comput Biol. 2008. PMID: 18463702 Free PMC article.

10

Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic.

Jin G, Nakhleh L, Snir S, Tuller T. Jin G, et al. Among authors: nakhleh l. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):495-505. doi: 10.1109/TCBB.2008.119. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19644176

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