Pevzner P - Search Results

1

MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection.

Rozanov DV, Rozanov ND, Chiotti KE, Reddy A, Wilmarth PA, David LL, Cha SW, Woo S, Pevzner P, Bafna V, Burrows GG, Rantala JK, Levin T, Anur P, Johnson-Camacho K, Tabatabaei S, Munson DJ, Bruno TC, Slansky JE, Kappler JW, Hirano N, Boegel S, Fox BA, Egelston C, Simons DL, Jimenez G, Lee PP, Gray JW, Spellman PT. Rozanov DV, et al. Among authors: pevzner p. J Proteomics. 2018 Mar 30;176:13-23. doi: 10.1016/j.jprot.2018.01.004. Epub 2018 Jan 10. J Proteomics. 2018. PMID: 29331515 Free PMC article.

2

Shotgun protein sequencing by tandem mass spectra assembly.

Bandeira N, Tang H, Bafna V, Pevzner P. Bandeira N, et al. Among authors: pevzner p. Anal Chem. 2004 Dec 15;76(24):7221-33. doi: 10.1021/ac0489162. Anal Chem. 2004. PMID: 15595863

3

Peptide sequence tags for fast database search in mass-spectrometry.

Frank A, Tanner S, Bafna V, Pevzner P. Frank A, et al. Among authors: pevzner p. J Proteome Res. 2005 Jul-Aug;4(4):1287-95. doi: 10.1021/pr050011x. J Proteome Res. 2005. PMID: 16083278

4

Identification of post-translational modifications by blind search of mass spectra.

Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA. Tsur D, et al. Nat Biotechnol. 2005 Dec;23(12):1562-7. doi: 10.1038/nbt1168. Epub 2005 Nov 27. Nat Biotechnol. 2005. PMID: 16311586

5

Identification of post-translational modifications via blind search of mass-spectra.

Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA. Tsur D, et al. Proc IEEE Comput Syst Bioinform Conf. 2005:157-66. doi: 10.1109/csb.2005.34. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447973

6

Decoding the fine-scale structure of a breast cancer genome and transcriptome.

Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C. Volik S, et al. Among authors: pevzner p. Genome Res. 2006 Mar;16(3):394-404. doi: 10.1101/gr.4247306. Epub 2006 Feb 3. Genome Res. 2006. PMID: 16461635 Free PMC article.

7

Wilmarth PA, Tanner S, Dasari S, Nagalla SR, Riviere MA, Bafna V, Pevzner PA, David LL. Wilmarth PA, et al. Among authors: pevzner pa. J Proteome Res. 2006 Oct;5(10):2554-66. doi: 10.1021/pr050473a. J Proteome Res. 2006. PMID: 17022627 Free PMC article.

8

Unrestrictive identification of post-translational modifications through peptide mass spectrometry.

Tanner S, Pevzner PA, Bafna V. Tanner S, et al. Nat Protoc. 2006;1(1):67-72. doi: 10.1038/nprot.2006.10. Nat Protoc. 2006. PMID: 17406213

9

Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach.

Liu X, Inbar Y, Dorrestein PC, Wynne C, Edwards N, Souda P, Whitelegge JP, Bafna V, Pevzner PA. Liu X, et al. Among authors: pevzner pa. Mol Cell Proteomics. 2010 Dec;9(12):2772-82. doi: 10.1074/mcp.M110.002766. Epub 2010 Sep 20. Mol Cell Proteomics. 2010. PMID: 20855543 Free PMC article.

10

Protein identification using top-down.

Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, Bafna V, Pevzner PA. Liu X, et al. Mol Cell Proteomics. 2012 Jun;11(6):M111.008524. doi: 10.1074/mcp.M111.008524. Epub 2011 Oct 25. Mol Cell Proteomics. 2012. PMID: 22027200 Free PMC article.

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