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Sequanix: a dynamic graphical interface for Snakemake workflows.
Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T. Desvillechabrol D, et al. Among authors: van helden j. Bioinformatics. 2018 Jun 1;34(11):1934-1936. doi: 10.1093/bioinformatics/bty034. Bioinformatics. 2018. PMID: 29361152 Free PMC article.
Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks.
Rioualen C, Charbonnier-Khamvongsa L, Collado-Vides J, van Helden J. Rioualen C, et al. Among authors: van helden j. Curr Protoc Bioinformatics. 2019 Jun;66(1):e72. doi: 10.1002/cpbi.72. Epub 2019 Feb 20. Curr Protoc Bioinformatics. 2019. PMID: 30786165 Free PMC article.
RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.
Castro-Mondragon JA, Rioualen C, Contreras-Moreira B, van Helden J. Castro-Mondragon JA, et al. Among authors: van helden j. Methods Mol Biol. 2016;1482:297-322. doi: 10.1007/978-1-4939-6396-6_19. Methods Mol Biol. 2016. PMID: 27557775
Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci: Coordinated Signatures of the Midguts' Remodeling As T. congolense-Supportive Niches.
Tsagmo Ngoune JM, Njiokou F, Loriod B, Kame-Ngasse G, Fernandez-Nunez N, Rioualen C, van Helden J, Geiger A. Tsagmo Ngoune JM, et al. Among authors: van helden j. Front Immunol. 2017 Jul 28;8:876. doi: 10.3389/fimmu.2017.00876. eCollection 2017. Front Immunol. 2017. PMID: 28804485 Free PMC article.
biotoolsSchema: a formalized schema for bioinformatics software description.
Ison J, Ienasescu H, Rydza E, Chmura P, Rapacki K, Gaignard A, Schwämmle V, van Helden J, Kalaš M, Ménager H. Ison J, et al. Among authors: van helden j. Gigascience. 2021 Jan 27;10(1):giaa157. doi: 10.1093/gigascience/giaa157. Gigascience. 2021. PMID: 33506265 Free PMC article.
Pathway discovery in metabolic networks by subgraph extraction.
Faust K, Dupont P, Callut J, van Helden J. Faust K, et al. Among authors: van helden j. Bioinformatics. 2010 May 1;26(9):1211-8. doi: 10.1093/bioinformatics/btq105. Epub 2010 Mar 12. Bioinformatics. 2010. PMID: 20228128 Free PMC article.
147 results