Shen-Orr SS - Search Results

1

Inflammatory macrophage-associated 3-gene signature predicts subclinical allograft injury and graft survival.

Azad TD, Donato M, Heylen L, Liu AB, Shen-Orr SS, Sweeney TE, Maltzman JS, Naesens M, Khatri P. Azad TD, et al. JCI Insight. 2018 Jan 25;3(2):e95659. doi: 10.1172/jci.insight.95659. eCollection 2018 Jan 25. JCI Insight. 2018. PMID: 29367465 Free PMC article.

2

Cell type-specific gene expression differences in complex tissues.

Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Shen-Orr SS, et al. Nat Methods. 2010 Apr;7(4):287-9. doi: 10.1038/nmeth.1439. Epub 2010 Mar 7. Nat Methods. 2010. PMID: 20208531 Free PMC article.

3

Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD.

Gaujoux R, Starosvetsky E, Maimon N, Vallania F, Bar-Yoseph H, Pressman S, Weisshof R, Goren I, Rabinowitz K, Waterman M, Yanai H, Dotan I, Sabo E, Chowers Y, Khatri P, Shen-Orr SS; Israeli IBD research Network (IIRN). Gaujoux R, et al. Gut. 2019 Apr;68(4):604-614. doi: 10.1136/gutjnl-2017-315494. Epub 2018 Apr 4. Gut. 2019. PMID: 29618496 Free PMC article.

4

A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring.

Alpert A, Pickman Y, Leipold M, Rosenberg-Hasson Y, Ji X, Gaujoux R, Rabani H, Starosvetsky E, Kveler K, Schaffert S, Furman D, Caspi O, Rosenschein U, Khatri P, Dekker CL, Maecker HT, Davis MM, Shen-Orr SS. Alpert A, et al. Nat Med. 2019 Mar;25(3):487-495. doi: 10.1038/s41591-019-0381-y. Epub 2019 Mar 6. Nat Med. 2019. PMID: 30842675 Free PMC article.

5

Pregnancy-Induced Alterations in NK Cell Phenotype and Function.

Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Le Gars M, et al. Front Immunol. 2019 Oct 23;10:2469. doi: 10.3389/fimmu.2019.02469. eCollection 2019. Front Immunol. 2019. PMID: 31708922 Free PMC article.

6

Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses.

HIPC-CHI Signatures Project Team; HIPC-I Consortium. HIPC-CHI Signatures Project Team, et al. Sci Immunol. 2017 Aug 25;2(14):eaal4656. doi: 10.1126/sciimmunol.aal4656. Sci Immunol. 2017. PMID: 28842433 Free PMC article.

7

Alignment of single-cell trajectories to compare cellular expression dynamics.

Alpert A, Moore LS, Dubovik T, Shen-Orr SS. Alpert A, et al. Nat Methods. 2018 Apr;15(4):267-270. doi: 10.1038/nmeth.4628. Epub 2018 Mar 12. Nat Methods. 2018. PMID: 29529018

8

Found In Translation: a machine learning model for mouse-to-human inference.

Normand R, Du W, Briller M, Gaujoux R, Starosvetsky E, Ziv-Kenet A, Shalev-Malul G, Tibshirani RJ, Shen-Orr SS. Normand R, et al. Nat Methods. 2018 Dec;15(12):1067-1073. doi: 10.1038/s41592-018-0214-9. Epub 2018 Nov 26. Nat Methods. 2018. PMID: 30478323

9

Autologous Hematological Stem Cell Transplantation for Systemic Sclerosis in Israel.

Rimar D, Butbul Aviel Y, Gefen A, Nevo N, Shen-Orr SS, Starosvetsky E, Rosner I, Rozenbaum M, Kaly L, Boulman N, Slobodin G, Zuckerman T. Rimar D, et al. Isr Med Assoc J. 2020 Feb;22(2):104-110. Isr Med Assoc J. 2020. PMID: 32043328 Free article.

10

Computational deconvolution: extracting cell type-specific information from heterogeneous samples.

Shen-Orr SS, Gaujoux R. Shen-Orr SS, et al. Curr Opin Immunol. 2013 Oct;25(5):571-8. doi: 10.1016/j.coi.2013.09.015. Epub 2013 Oct 19. Curr Opin Immunol. 2013. PMID: 24148234 Free PMC article. Review.

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