Gao Y - Search Results

1

Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.

Kim D, Seo SW, Gao Y, Nam H, Guzman GI, Cho BK, Palsson BO. Kim D, et al. Among authors: gao y. Nucleic Acids Res. 2018 Apr 6;46(6):2901-2917. doi: 10.1093/nar/gky069. Nucleic Acids Res. 2018. PMID: 29394395 Free PMC article.

2

Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655.

Seo SW, Gao Y, Kim D, Szubin R, Yang J, Cho BK, Palsson BO. Seo SW, et al. Among authors: gao y. Sci Rep. 2017 May 19;7(1):2181. doi: 10.1038/s41598-017-02110-7. Sci Rep. 2017. PMID: 28526842 Free PMC article.

3

Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities.

Fang X, Sastry A, Mih N, Kim D, Tan J, Yurkovich JT, Lloyd CJ, Gao Y, Yang L, Palsson BO. Fang X, et al. Among authors: gao y. Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10286-10291. doi: 10.1073/pnas.1702581114. Epub 2017 Sep 5. Proc Natl Acad Sci U S A. 2017. PMID: 28874552 Free PMC article.

4

Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation.

Chen K, Gao Y, Mih N, O'Brien EJ, Yang L, Palsson BO. Chen K, et al. Among authors: gao y. Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11548-11553. doi: 10.1073/pnas.1705524114. Epub 2017 Oct 10. Proc Natl Acad Sci U S A. 2017. PMID: 29073085 Free PMC article.

5

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655.

Gao Y, Yurkovich JT, Seo SW, Kabimoldayev I, Dräger A, Chen K, Sastry AV, Fang X, Mih N, Yang L, Eichner J, Cho BK, Kim D, Palsson BO. Gao Y, et al. Nucleic Acids Res. 2018 Nov 16;46(20):10682-10696. doi: 10.1093/nar/gky752. Nucleic Acids Res. 2018. PMID: 30137486 Free PMC article.

6

Cellular responses to reactive oxygen species are predicted from molecular mechanisms.

Yang L, Mih N, Anand A, Park JH, Tan J, Yurkovich JT, Monk JM, Lloyd CJ, Sandberg TE, Seo SW, Kim D, Sastry AV, Phaneuf P, Gao Y, Broddrick JT, Chen K, Heckmann D, Szubin R, Hefner Y, Feist AM, Palsson BO. Yang L, et al. Among authors: gao y. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14368-14373. doi: 10.1073/pnas.1905039116. Epub 2019 Jul 3. Proc Natl Acad Sci U S A. 2019. PMID: 31270234 Free PMC article.

7

Adaptive laboratory evolution of Escherichia coli under acid stress.

Du B, Olson CA, Sastry AV, Fang X, Phaneuf PV, Chen K, Wu M, Szubin R, Xu S, Gao Y, Hefner Y, Feist AM, Palsson BO. Du B, et al. Among authors: gao y. Microbiology (Reading). 2020 Feb;166(2):141-148. doi: 10.1099/mic.0.000867. Epub 2019 Oct 18. Microbiology (Reading). 2020. PMID: 31625833 Free PMC article.

8

The Escherichia coli transcriptome mostly consists of independently regulated modules.

Sastry AV, Gao Y, Szubin R, Hefner Y, Xu S, Kim D, Choudhary KS, Yang L, King ZA, Palsson BO. Sastry AV, et al. Among authors: gao y. Nat Commun. 2019 Dec 4;10(1):5536. doi: 10.1038/s41467-019-13483-w. Nat Commun. 2019. PMID: 31797920 Free PMC article.

9

The Bitome: digitized genomic features reveal fundamental genome organization.

Lamoureux CR, Choudhary KS, King ZA, Sandberg TE, Gao Y, Sastry AV, Phaneuf PV, Choe D, Cho BK, Palsson BO. Lamoureux CR, et al. Among authors: gao y. Nucleic Acids Res. 2020 Oct 9;48(18):10157-10163. doi: 10.1093/nar/gkaa774. Nucleic Acids Res. 2020. PMID: 32976587 Free PMC article.

10

Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships.

Choudhary KS, Kleinmanns JA, Decker K, Sastry AV, Gao Y, Szubin R, Seif Y, Palsson BO. Choudhary KS, et al. Among authors: gao y. mSystems. 2020 Nov 10;5(6):e00980-20. doi: 10.1128/mSystems.00980-20. mSystems. 2020. PMID: 33172971 Free PMC article.

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