Zhu X - Search Results

1

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.

Donnard E, Vangala P, Afik S, McCauley S, Nowosielska A, Kucukural A, Tabak B, Zhu X, Diehl W, McDonel P, Yosef N, Luban J, Garber M. Donnard E, et al. Among authors: zhu x. Cell Syst. 2018 Mar 28;6(3):381-394.e7. doi: 10.1016/j.cels.2018.01.002. Epub 2018 Feb 14. Cell Syst. 2018. PMID: 29454939 Free PMC article.

2

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.

Afik S, Bartok O, Artyomov MN, Shishkin AA, Kadri S, Hanan M, Zhu X, Garber M, Kadener S. Afik S, et al. Among authors: zhu x. Nucleic Acids Res. 2017 Jun 20;45(11):e95. doi: 10.1093/nar/gkx133. Nucleic Acids Res. 2017. PMID: 28335028 Free PMC article.

3

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs.

Chen J, Shishkin AA, Zhu X, Kadri S, Maza I, Guttman M, Hanna JH, Regev A, Garber M. Chen J, et al. Among authors: zhu x. Genome Biol. 2016 Feb 2;17:19. doi: 10.1186/s13059-016-0880-9. Genome Biol. 2016. PMID: 26838501 Free PMC article.

4

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.

He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R, Deng XW. He G, et al. Among authors: zhu x. Plant Cell. 2010 Jan;22(1):17-33. doi: 10.1105/tpc.109.072041. Epub 2010 Jan 19. Plant Cell. 2010. PMID: 20086188 Free PMC article.

5

Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence.

Litovchick L, Sadasivam S, Florens L, Zhu X, Swanson SK, Velmurugan S, Chen R, Washburn MP, Liu XS, DeCaprio JA. Litovchick L, et al. Among authors: zhu x. Mol Cell. 2007 May 25;26(4):539-51. doi: 10.1016/j.molcel.2007.04.015. Mol Cell. 2007. PMID: 17531812 Free article.

6

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.

He H, Cai L, Skogerbø G, Deng W, Liu T, Zhu X, Wang Y, Jia D, Zhang Z, Tao Y, Zeng H, Aftab MN, Cui Y, Liu G, Chen R. He H, et al. Among authors: zhu x. Nucleic Acids Res. 2006 May 31;34(10):2976-83. doi: 10.1093/nar/gkl371. Print 2006. Nucleic Acids Res. 2006. PMID: 16738136 Free PMC article.

7

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.

He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R. He H, et al. Among authors: zhu x. Genome Res. 2007 Oct;17(10):1471-7. doi: 10.1101/gr.6611807. Epub 2007 Sep 4. Genome Res. 2007. PMID: 17785534 Free PMC article.

8

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R. Shi B, et al. Among authors: zhu x. BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92. BMC Genomics. 2009. PMID: 19243610 Free PMC article.

9

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Wang Y, Chen J, Wei G, He H, Zhu X, Xiao T, Yuan J, Dong B, He S, Skogerbø G, Chen R. Wang Y, et al. Among authors: zhu x. Nucleic Acids Res. 2011 Jul;39(12):5203-14. doi: 10.1093/nar/gkr102. Epub 2011 Mar 4. Nucleic Acids Res. 2011. PMID: 21378118 Free PMC article.

10

Estimating developmental states of tumors and normal tissues using a linear time-ordered model.

Zhang B, Chen B, Wu T, Xuan Z, Zhu X, Chen R. Zhang B, et al. Among authors: zhu x. BMC Bioinformatics. 2011 Feb 11;12:53. doi: 10.1186/1471-2105-12-53. BMC Bioinformatics. 2011. PMID: 21310084 Free PMC article.

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